Back to Build/check report for BioC 3.17: simplified long |
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This page was generated on 2023-03-01 07:38:45 -0000 (Wed, 01 Mar 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4266 |
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To the developers/maintainers of the MoonlightR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MoonlightR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1238/2171 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
MoonlightR 1.25.0 (landing page) Matteo Tiberti
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
Package: MoonlightR |
Version: 1.25.0 |
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:MoonlightR.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings MoonlightR_1.25.0.tar.gz |
StartedAt: 2023-02-28 08:50:06 -0000 (Tue, 28 Feb 2023) |
EndedAt: 2023-02-28 08:57:19 -0000 (Tue, 28 Feb 2023) |
EllapsedTime: 432.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: MoonlightR.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:MoonlightR.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings MoonlightR_1.25.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/MoonlightR.Rcheck’ * using R Under development (unstable) (2023-01-14 r83615) * using platform: aarch64-unknown-linux-gnu (64-bit) * R was compiled by gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 * running under: Ubuntu 22.04.1 LTS * using session charset: UTF-8 * checking for file ‘MoonlightR/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘MoonlightR’ version ‘1.25.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘MoonlightR’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed URA 17.088 0.368 16.165 FEA 13.621 0.220 13.842 plotFEA 8.932 0.088 9.021 DPA 5.744 0.148 5.892 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘Moonlight.Rmd’ using ‘UTF-8’... OK NONE * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: OK
MoonlightR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL MoonlightR ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘MoonlightR’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MoonlightR)
MoonlightR.Rcheck/MoonlightR-Ex.timings
name | user | system | elapsed | |
DPA | 5.744 | 0.148 | 5.892 | |
FEA | 13.621 | 0.220 | 13.842 | |
GRN | 2.654 | 0.008 | 1.369 | |
GSEA | 0.001 | 0.000 | 0.001 | |
LPA | 0.000 | 0.003 | 0.003 | |
PRA | 0.003 | 0.000 | 0.003 | |
URA | 17.088 | 0.368 | 16.165 | |
getDataGEO | 0.000 | 0.000 | 0.001 | |
getDataTCGA | 0 | 0 | 0 | |
moonlight | 3.950 | 0.040 | 3.991 | |
plotCircos | 0.84 | 0.02 | 0.86 | |
plotFEA | 8.932 | 0.088 | 9.021 | |
plotNetworkHive | 0.105 | 0.000 | 0.104 | |
plotURA | 0.079 | 0.000 | 0.080 | |