| Back to Build/check report for BioC 3.17: simplified long | 
  | 
This page was generated on 2023-03-01 07:38:50 -0000 (Wed, 01 Mar 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs | 
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4266 | 
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| 
To the developers/maintainers of the SELEX package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SELEX.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page.  | 
| Package 1825/2171 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SELEX 1.31.0  (landing page) Harmen J. Bussemaker 
  | kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
| Package: SELEX | 
| Version: 1.31.0 | 
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:SELEX.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings SELEX_1.31.0.tar.gz | 
| StartedAt: 2023-02-28 15:04:31 -0000 (Tue, 28 Feb 2023) | 
| EndedAt: 2023-02-28 15:06:47 -0000 (Tue, 28 Feb 2023) | 
| EllapsedTime: 136.2 seconds | 
| RetCode: 0 | 
| Status: OK | 
| CheckDir: SELEX.Rcheck | 
| Warnings: 0 | 
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### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:SELEX.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings SELEX_1.31.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/SELEX.Rcheck’
* using R Under development (unstable) (2023-01-14 r83615)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* checking for file ‘SELEX/DESCRIPTION’ ... OK
* this is package ‘SELEX’ version ‘1.31.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SELEX’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in Makefiles ... OK
* checking for GNU extensions in Makefiles ... OK
* checking include directives in Makefiles ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
SELEX           21.923  2.121   7.756
selex.seqfilter  8.374  0.461   2.341
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘SELEX.Rnw’... OK
 OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
SELEX.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL SELEX ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘SELEX’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SELEX)
SELEX.Rcheck/SELEX-Ex.timings
| name | user | system | elapsed | |
| SELEX | 21.923 | 2.121 | 7.756 | |
| selex.affinities | 0.679 | 0.060 | 0.380 | |
| selex.config | 0.099 | 0.008 | 0.035 | |
| selex.countSummary | 0.947 | 0.039 | 0.361 | |
| selex.counts | 1.079 | 0.036 | 0.531 | |
| selex.defineSample | 0.076 | 0.001 | 0.041 | |
| selex.exampledata | 0.067 | 0.003 | 0.031 | |
| selex.fastqPSFM | 0.375 | 0.009 | 0.253 | |
| selex.getAttributes | 0.209 | 0.012 | 0.061 | |
| selex.getRound0 | 0.251 | 0.004 | 0.101 | |
| selex.getSeqfilter | 0.095 | 0.000 | 0.029 | |
| selex.infogain | 1.765 | 0.035 | 0.512 | |
| selex.infogainSummary | 0.669 | 0.022 | 0.250 | |
| selex.jvmStatus | 0.080 | 0.004 | 0.034 | |
| selex.kmax | 1.479 | 0.276 | 0.709 | |
| selex.kmerPSFM | 0.524 | 0.040 | 0.204 | |
| selex.loadAnnotation | 0.351 | 0.004 | 0.109 | |
| selex.mm | 0.692 | 0.020 | 0.232 | |
| selex.mmProb | 0.322 | 0.019 | 0.209 | |
| selex.mmSummary | 0.300 | 0.031 | 0.228 | |
| selex.revcomp | 0.735 | 0.011 | 0.391 | |
| selex.run | 1.564 | 0.028 | 0.523 | |
| selex.sample | 0.174 | 0.003 | 0.081 | |
| selex.samplePSFM | 0.414 | 0.009 | 0.194 | |
| selex.sampleSummary | 0.139 | 0.004 | 0.073 | |
| selex.saveAnnotation | 0.040 | 0.007 | 0.041 | |
| selex.seqfilter | 8.374 | 0.461 | 2.341 | |
| selex.setwd | 0.075 | 0.000 | 0.019 | |
| selex.split | 0.499 | 0.017 | 0.167 | |
| selex.summary | 1.234 | 0.032 | 0.555 | |