Back to Build/check report for BioC 3.17: simplified long |
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This page was generated on 2023-03-01 07:38:50 -0000 (Wed, 01 Mar 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4266 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the SELEX package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SELEX.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1825/2171 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
SELEX 1.31.0 (landing page) Harmen J. Bussemaker
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
Package: SELEX |
Version: 1.31.0 |
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:SELEX.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings SELEX_1.31.0.tar.gz |
StartedAt: 2023-02-28 15:04:31 -0000 (Tue, 28 Feb 2023) |
EndedAt: 2023-02-28 15:06:47 -0000 (Tue, 28 Feb 2023) |
EllapsedTime: 136.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: SELEX.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:SELEX.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings SELEX_1.31.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/SELEX.Rcheck’ * using R Under development (unstable) (2023-01-14 r83615) * using platform: aarch64-unknown-linux-gnu (64-bit) * R was compiled by gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 * running under: Ubuntu 22.04.1 LTS * using session charset: UTF-8 * checking for file ‘SELEX/DESCRIPTION’ ... OK * this is package ‘SELEX’ version ‘1.31.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘SELEX’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in Makefiles ... OK * checking for GNU extensions in Makefiles ... OK * checking include directives in Makefiles ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed SELEX 21.923 2.121 7.756 selex.seqfilter 8.374 0.461 2.341 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘SELEX.Rnw’... OK OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: OK
SELEX.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL SELEX ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘SELEX’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SELEX)
SELEX.Rcheck/SELEX-Ex.timings
name | user | system | elapsed | |
SELEX | 21.923 | 2.121 | 7.756 | |
selex.affinities | 0.679 | 0.060 | 0.380 | |
selex.config | 0.099 | 0.008 | 0.035 | |
selex.countSummary | 0.947 | 0.039 | 0.361 | |
selex.counts | 1.079 | 0.036 | 0.531 | |
selex.defineSample | 0.076 | 0.001 | 0.041 | |
selex.exampledata | 0.067 | 0.003 | 0.031 | |
selex.fastqPSFM | 0.375 | 0.009 | 0.253 | |
selex.getAttributes | 0.209 | 0.012 | 0.061 | |
selex.getRound0 | 0.251 | 0.004 | 0.101 | |
selex.getSeqfilter | 0.095 | 0.000 | 0.029 | |
selex.infogain | 1.765 | 0.035 | 0.512 | |
selex.infogainSummary | 0.669 | 0.022 | 0.250 | |
selex.jvmStatus | 0.080 | 0.004 | 0.034 | |
selex.kmax | 1.479 | 0.276 | 0.709 | |
selex.kmerPSFM | 0.524 | 0.040 | 0.204 | |
selex.loadAnnotation | 0.351 | 0.004 | 0.109 | |
selex.mm | 0.692 | 0.020 | 0.232 | |
selex.mmProb | 0.322 | 0.019 | 0.209 | |
selex.mmSummary | 0.300 | 0.031 | 0.228 | |
selex.revcomp | 0.735 | 0.011 | 0.391 | |
selex.run | 1.564 | 0.028 | 0.523 | |
selex.sample | 0.174 | 0.003 | 0.081 | |
selex.samplePSFM | 0.414 | 0.009 | 0.194 | |
selex.sampleSummary | 0.139 | 0.004 | 0.073 | |
selex.saveAnnotation | 0.040 | 0.007 | 0.041 | |
selex.seqfilter | 8.374 | 0.461 | 2.341 | |
selex.setwd | 0.075 | 0.000 | 0.019 | |
selex.split | 0.499 | 0.017 | 0.167 | |
selex.summary | 1.234 | 0.032 | 0.555 | |