| Back to Build/check report for BioC 3.17: simplified long |
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This page was generated on 2023-03-01 07:38:51 -0000 (Wed, 01 Mar 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4266 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the SPONGE package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SPONGE.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1944/2171 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SPONGE 1.21.0 (landing page) Markus List
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | ERROR | skipped | |||||||||
| Package: SPONGE |
| Version: 1.21.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data SPONGE |
| StartedAt: 2023-02-27 18:54:36 -0000 (Mon, 27 Feb 2023) |
| EndedAt: 2023-02-27 18:59:06 -0000 (Mon, 27 Feb 2023) |
| EllapsedTime: 270.5 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data SPONGE
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* checking for file ‘SPONGE/DESCRIPTION’ ... OK
* preparing ‘SPONGE’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘SPONGE.Rmd’ using rmarkdown
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "SPONGE vignette", and the latter is "Sparse Partial correlation ON Gene Expression with SPONGE". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘SPONGE.Rmd’
--- re-building ‘spongEffects.Rmd’ using rmarkdown
Quitting from lines 265-272 (spongEffects.Rmd)
Error: processing vignette 'spongEffects.Rmd' failed with diagnostics:
Timeout was reached: [www.ensembl.org:443] Operation timed out after 10000 milliseconds with 237658 bytes received
--- failed re-building ‘spongEffects.Rmd’
SUMMARY: processing the following file failed:
‘spongEffects.Rmd’
Error: Vignette re-building failed.
Execution halted