Back to Build/check report for BioC 3.17: simplified long |
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This page was generated on 2023-03-01 07:38:51 -0000 (Wed, 01 Mar 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4266 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the SpidermiR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SpidermiR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1933/2171 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
SpidermiR 1.29.0 (landing page) Claudia Cava
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
Package: SpidermiR |
Version: 1.29.0 |
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:SpidermiR.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings SpidermiR_1.29.0.tar.gz |
StartedAt: 2023-02-28 16:20:44 -0000 (Tue, 28 Feb 2023) |
EndedAt: 2023-02-28 16:24:08 -0000 (Tue, 28 Feb 2023) |
EllapsedTime: 203.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: SpidermiR.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:SpidermiR.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings SpidermiR_1.29.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/SpidermiR.Rcheck’ * using R Under development (unstable) (2023-01-14 r83615) * using platform: aarch64-unknown-linux-gnu (64-bit) * R was compiled by gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 * running under: Ubuntu 22.04.1 LTS * using session charset: UTF-8 * checking for file ‘SpidermiR/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘SpidermiR’ version ‘1.29.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘SpidermiR’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘gdata’ All declared Imports should be used. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed SpidermiRdownload_miRNAprediction 5.529 1.215 18.489 SpidermiRdownload_drug_gene 1.379 0.142 48.666 SpidermiRquery_disease 0.792 0.055 7.284 SpidermiRprepare_NET 0.637 0.031 6.502 * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.17-bioc/meat/SpidermiR.Rcheck/00check.log’ for details.
SpidermiR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL SpidermiR ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘SpidermiR’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SpidermiR)
SpidermiR.Rcheck/SpidermiR-Ex.timings
name | user | system | elapsed | |
SpidermiRanalyze_degree_centrality | 0.005 | 0.000 | 0.005 | |
SpidermiRanalyze_direct_net | 0.003 | 0.001 | 0.005 | |
SpidermiRanalyze_direct_subnetwork | 0.006 | 0.000 | 0.006 | |
SpidermiRanalyze_subnetwork_neigh | 0.004 | 0.000 | 0.004 | |
SpidermiRdownload_drug_gene | 1.379 | 0.142 | 48.666 | |
SpidermiRdownload_miRNAprediction | 5.529 | 1.215 | 18.489 | |
SpidermiRdownload_net | 0.187 | 0.013 | 4.640 | |
SpidermiRprepare_NET | 0.637 | 0.031 | 6.502 | |
SpidermiRquery_disease | 0.792 | 0.055 | 7.284 | |
SpidermiRquery_networks_type | 0.017 | 0.003 | 1.500 | |
SpidermiRquery_spec_networks | 0.046 | 0.000 | 0.688 | |
SpidermiRquery_species | 0.013 | 0.000 | 0.379 | |