| Back to Build/check report for BioC 3.17: simplified long | 
  | 
This page was generated on 2023-03-01 07:38:53 -0000 (Wed, 01 Mar 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs | 
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4266 | 
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| 
To the developers/maintainers of the Xeva package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Xeva.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page.  | 
| Package 2159/2171 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Xeva 1.15.0  (landing page) Benjamin Haibe-Kains 
  | kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
| Package: Xeva | 
| Version: 1.15.0 | 
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:Xeva.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings Xeva_1.15.0.tar.gz | 
| StartedAt: 2023-02-28 18:48:23 -0000 (Tue, 28 Feb 2023) | 
| EndedAt: 2023-02-28 18:53:41 -0000 (Tue, 28 Feb 2023) | 
| EllapsedTime: 318.4 seconds | 
| RetCode: 0 | 
| Status: OK | 
| CheckDir: Xeva.Rcheck | 
| Warnings: 0 | 
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### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:Xeva.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings Xeva_1.15.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/Xeva.Rcheck’
* using R Under development (unstable) (2023-01-14 r83615)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* checking for file ‘Xeva/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Xeva’ version ‘1.15.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Xeva’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... NOTE
  Note: found 31 marked UTF-8 strings
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘Xeva.Rnw’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.17-bioc/meat/Xeva.Rcheck/00check.log’
for details.
Xeva.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL Xeva ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘Xeva’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Xeva)
Xeva.Rcheck/Xeva-Ex.timings
| name | user | system | elapsed | |
| ABC | 0.005 | 0.000 | 0.005 | |
| AUC | 0.018 | 0.004 | 0.023 | |
| TGI | 0 | 0 | 0 | |
| addExperimentalDesign | 0.127 | 0.000 | 0.128 | |
| angle | 0.009 | 0.000 | 0.008 | |
| batchInfo | 0.143 | 0.000 | 0.143 | |
| createXevaSet | 0.117 | 0.009 | 0.273 | |
| dosePlot | 0.365 | 0.016 | 0.381 | |
| downloadXevaSet | 0.157 | 0.003 | 1.659 | |
| drugInform | 0.123 | 0.000 | 0.123 | |
| drugSensitivitySig | 0.451 | 0.028 | 0.478 | |
| getExperiment | 0.188 | 0.001 | 0.189 | |
| getMolecularProfiles | 0.124 | 0.000 | 0.123 | |
| lmm | 0.103 | 0.004 | 0.107 | |
| mRECIST | 0.003 | 0.000 | 0.003 | |
| modelInfo | 0.126 | 0.004 | 0.131 | |
| plotPDX | 1.681 | 0.068 | 1.749 | |
| plotmRECIST | 2.650 | 0.039 | 2.691 | |
| response | 0.178 | 0.001 | 0.178 | |
| selectModelIds | 0.224 | 0.003 | 0.227 | |
| sensitivity | 0.130 | 0.001 | 0.130 | |
| setResponse | 3.931 | 0.087 | 4.019 | |
| slope | 0.012 | 0.000 | 0.012 | |
| subsetXeva | 0.224 | 0.000 | 0.225 | |
| summarizeMolecularProfiles | 0.169 | 0.000 | 0.169 | |
| summarizeResponse | 0.250 | 0.000 | 0.249 | |
| waterfall | 1.111 | 0.012 | 1.123 | |