Back to Build/check report for BioC 3.17: simplified long |
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This page was generated on 2023-03-01 07:38:35 -0000 (Wed, 01 Mar 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4266 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the a4Base package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/a4Base.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 2/2171 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
a4Base 1.47.0 (landing page) Laure Cougnaud
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
Package: a4Base |
Version: 1.47.0 |
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:a4Base.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings a4Base_1.47.0.tar.gz |
StartedAt: 2023-02-27 19:54:56 -0000 (Mon, 27 Feb 2023) |
EndedAt: 2023-02-27 19:58:55 -0000 (Mon, 27 Feb 2023) |
EllapsedTime: 239.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: a4Base.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:a4Base.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings a4Base_1.47.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/a4Base.Rcheck’ * using R Under development (unstable) (2023-01-14 r83615) * using platform: aarch64-unknown-linux-gnu (64-bit) * R was compiled by gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 * running under: Ubuntu 22.04.1 LTS * using session charset: UTF-8 * checking for file ‘a4Base/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘a4Base’ version ‘1.47.0’ * checking package namespace information ... OK * checking package dependencies ... NOTE Package which this enhances but not available for checking: ‘JavaGD’ * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘a4Base’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) filterVarInt.Rd:52: Escaped LaTeX specials: \& checkRd: (-1) histPvalue.Rd:50: Escaped LaTeX specials: \& checkRd: (-1) lassoReg.Rd:38: Escaped LaTeX specials: \& checkRd: (-1) spectralMap.Rd:49: Escaped LaTeX specials: \& checkRd: (-1) volcanoPlot.Rd:45: Escaped LaTeX specials: \& * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed spectralMap 19.071 0.460 19.532 computeLogRatio 7.195 0.136 7.330 plotLogRatio 6.338 0.244 6.582 * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.17-bioc/meat/a4Base.Rcheck/00check.log’ for details.
a4Base.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL a4Base ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘a4Base’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (a4Base)
a4Base.Rcheck/a4Base-Ex.timings
name | user | system | elapsed | |
a4palette | 0.027 | 0.011 | 0.039 | |
addQuantilesColors | 2.072 | 0.124 | 2.196 | |
boxPlot | 2.845 | 0.067 | 2.913 | |
combineTwoExpressionSet | 0.001 | 0.000 | 0.000 | |
computeLogRatio | 7.195 | 0.136 | 7.330 | |
createExpressionSet | 0.046 | 0.001 | 0.046 | |
filterVarInt | 1.912 | 0.064 | 1.976 | |
heatmap.expressionSet | 0.001 | 0.000 | 0.001 | |
histPvalue | 2.666 | 0.095 | 2.762 | |
histpvalueplotter | 1.879 | 0.052 | 1.931 | |
lassoReg | 1.887 | 0.037 | 1.923 | |
logReg | 0 | 0 | 0 | |
nlcvTT | 0 | 0 | 0 | |
plot1gene | 1.770 | 0.034 | 1.805 | |
plotComb2Samples | 1.960 | 0.044 | 2.004 | |
plotCombMultSamples | 3.274 | 0.060 | 3.336 | |
plotCombination2genes | 2.662 | 0.044 | 2.706 | |
plotLogRatio | 6.338 | 0.244 | 6.582 | |
probabilitiesPlot | 0.001 | 0.000 | 0.000 | |
probe2gene | 1.494 | 0.048 | 1.541 | |
profilesPlot | 1.649 | 0.036 | 1.684 | |
propdegenescalculation | 1.876 | 0.032 | 1.908 | |
replicates | 0.002 | 0.000 | 0.002 | |
spectralMap | 19.071 | 0.460 | 19.532 | |
tTest | 2.658 | 0.040 | 2.698 | |
volcanoPlot | 2.166 | 0.044 | 2.211 | |