| Back to Build/check report for BioC 3.17: simplified long |
|
This page was generated on 2023-03-01 07:38:35 -0000 (Wed, 01 Mar 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4266 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the bandle package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/bandle.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 110/2171 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| bandle 1.3.0 (landing page) Oliver M. Crook
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
| Package: bandle |
| Version: 1.3.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:bandle.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings bandle_1.3.0.tar.gz |
| StartedAt: 2023-02-27 21:07:48 -0000 (Mon, 27 Feb 2023) |
| EndedAt: 2023-02-27 21:29:55 -0000 (Mon, 27 Feb 2023) |
| EllapsedTime: 1326.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: bandle.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:bandle.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings bandle_1.3.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/bandle.Rcheck’
* using R Under development (unstable) (2023-01-14 r83615)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* checking for file ‘bandle/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘bandle’ version ‘1.3.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘bandle’ can be installed ... OK
* used C++ compiler: ‘g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
* checking installed package size ... NOTE
installed size is 7.5Mb
sub-directories of 1Mb or more:
libs 6.7Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' call to ‘Biobase’ which was already attached by Depends.
Please remove these calls from your code.
':::' call which should be '::': ‘dplyr:::summarise’
See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
bandle-differentiallocalisation 48.091 0.391 48.485
bandle-gpfit 31.951 0.191 32.143
bandle 22.321 0.108 22.429
bandle-EFDR 16.037 0.372 16.409
bandle-predict 16.029 0.060 16.089
bandle-plots-translocations 15.777 0.088 15.865
bandle-process 15.374 0.044 15.419
bandle-plots-convergence 13.395 0.131 13.527
bandle-plots-translocations-table 13.253 0.040 13.293
bandle-plots-prob 12.081 0.052 12.132
bandle-prior 9.444 0.276 9.720
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘spelling.R’
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘v01-getting-started.Rmd’ using ‘UTF-8’... OK
‘v02-workflow.Rmd’ using ‘UTF-8’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
‘/home/biocbuild/bbs-3.17-bioc/meat/bandle.Rcheck/00check.log’
for details.
bandle.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL bandle
###
##############################################################################
##############################################################################
* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’
* installing *source* package ‘bandle’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
using C++11
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/BH/include' -I/usr/local/include -fopenmp -fPIC -g -O2 -Wall -c Bessel2ndKind.cpp -o Bessel2ndKind.o
In file included from /home/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
from /home/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
from /home/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
from /home/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
from /home/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
from /home/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
from /home/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/lexical_cast.hpp:30,
from /home/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/math/tools/convert_from_string.hpp:15,
from /home/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/math/constants/constants.hpp:14,
from /home/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/math/special_functions/gamma.hpp:24,
from /home/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/math/special_functions/detail/bessel_jy.hpp:14,
from /home/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/math/special_functions/bessel.hpp:20,
from Bessel2ndKind.cpp:3:
/home/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
194 | failed ************ (Pred::************
| ^~~~~~~~~~~~~~~~~~~
195 | assert_arg( void (*)(Pred), typename assert_arg_pred<Pred>::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
196 | );
| ~
/home/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses
194 | failed ************ (Pred::************
| ^~~~~~~~~~~~~~~~~~~
| -
195 | assert_arg( void (*)(Pred), typename assert_arg_pred<Pred>::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
196 | );
| ~
| -
/home/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not<Pred>::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
201 | );
| ~
/home/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| -
200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not<Pred>::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
201 | );
| ~
| -
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/BH/include' -I/usr/local/include -fopenmp -fPIC -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/BH/include' -I/usr/local/include -fopenmp -fPIC -g -O2 -Wall -c dmvtCpp.cpp -o dmvtCpp.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/BH/include' -I/usr/local/include -fopenmp -fPIC -g -O2 -Wall -c leapfrogGPcpp.cpp -o leapfrogGPcpp.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/BH/include' -I/usr/local/include -fopenmp -fPIC -g -O2 -Wall -c pg_sample.cpp -o pg_sample.o
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.17-bioc/R/lib -L/usr/local/lib -o bandle.so Bessel2ndKind.o RcppExports.o dmvtCpp.o leapfrogGPcpp.o pg_sample.o -fopenmp -llapack -L/home/biocbuild/bbs-3.17-bioc/R/lib -lRblas -lgfortran -lm -L/home/biocbuild/bbs-3.17-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.17-bioc/R/library/00LOCK-bandle/00new/bandle/libs
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function from function ‘posteriorEstimates’ in package ‘bandle’
Creating a generic function from function ‘bandleJoint’ in package ‘bandle’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bandle)
bandle.Rcheck/tests/spelling.Rout
R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> #if(requireNamespace('spelling', quietly = TRUE))
> # spelling::spell_check_test(vignettes = TRUE, error = FALSE,
> # skip_on_cran = TRUE)
>
> proc.time()
user system elapsed
0.182 0.043 0.209
bandle.Rcheck/tests/testthat.Rout
R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # The setting of R_TESTS exists to work around an R bug. See
> # https://github.com/hadley/testthat/issues/144
> # We should remove it when the issue is resolved.
> Sys.setenv("R_TESTS" = "")
>
> library("testthat")
> library("bandle")
Loading required package: S4Vectors
Loading required package: stats4
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which.max, which.min
Attaching package: 'S4Vectors'
The following objects are masked from 'package:base':
I, expand.grid, unname
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: MSnbase
Loading required package: mzR
Loading required package: Rcpp
Loading required package: ProtGenerics
Attaching package: 'ProtGenerics'
The following object is masked from 'package:stats':
smooth
This is MSnbase version 2.25.2
Visit https://lgatto.github.io/MSnbase/ to get started.
Attaching package: 'MSnbase'
The following object is masked from 'package:base':
trimws
Loading required package: pRoloc
Loading required package: MLInterfaces
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: IRanges
Loading required package: XML
Attaching package: 'annotate'
The following object is masked from 'package:mzR':
nChrom
Loading required package: cluster
Loading required package: BiocParallel
This is pRoloc version 1.39.1
Visit https://lgatto.github.io/pRoloc/ to get started.
Attaching package: 'bandle'
The following object is masked from 'package:pRoloc':
spatial2D
> library("pRolocdata")
This is pRolocdata version 1.37.0.
Use 'pRolocdata()' to list available data sets.
>
> test_check("bandle")
[1] "markers"
[1] "markers"
[1] "markers"
|
| | 0%
|
|============== | 20%
|
|============================ | 40%
|
|========================================== | 60%[1] "markers"
[1] "markers"
|
| | 0%
|
|============== | 20%
|
|============================ | 40%
|
|========================================== | 60%[1] "xx"
[1] "xx"
|
| | 0%
|
|============== | 20%
|
|============================ | 40%
|
|========================================== | 60%[1] "xx"
[1] "xx"
|
| | 0%
|
|============== | 20%
|
|============================ | 40%
|
|========================================== | 60%[1] "markers"
[1] "markers"
|
| | 0%
|
|============== | 20%
|
|============================ | 40%
|
|========================================== | 60%[1] "markers"
[1] "markers"
|
| | 0%
|
|============== | 20%
|
|============================ | 40%
|
|========================================== | 60%[1] "xx"
[1] "xx"
|
| | 0%
|
|============== | 20%
|
|============================ | 40%
|
|========================================== | 60%[1] "xx"
[1] "xx"
|
| | 0%
|
|============== | 20%
|
|============================ | 40%
|
|========================================== | 60%[1] "markers"
[1] "markers"
|
| | 0%
|
|============== | 20%
|
|============================ | 40%
|
|========================================== | 60%[1] "markers"
[1] "markers"
|
| | 0%
|
|============== | 20%
|
|============================ | 40%
|
|========================================== | 60%[1] "xx"
[1] "xx"
|
| | 0%
|
|============== | 20%
|
|============================ | 40%
|
|========================================== | 60%[1] "xx"
[1] "xx"
|
| | 0%
|
|============== | 20%
|
|============================ | 40%
|
|========================================== | 60%[1] "markers"
[1] "markers"
|
| | 0%
|
|============== | 20%
|
|============================ | 40%
|
|========================================== | 60%[1] "markers"
[1] "markers"
|
| | 0%
|
|============== | 20%
|
|============================ | 40%
|
|========================================== | 60%[1] "xx"
[1] "xx"
|
| | 0%
|
|============== | 20%
|
|============================ | 40%
|
|========================================== | 60%[1] "xx"
[1] "xx"
|
| | 0%
|
|============== | 20%
|
|============================ | 40%
|
|========================================== | 60%[1] "markers"
[1] "markers"
|
| | 0%
|
|==== | 5%
|
|======= | 10%
|
|========== | 15%
|
|============== | 20%
|
|================== | 25%
|
|===================== | 30%
|
|======================== | 35%
|
|============================ | 40%
|
|================================ | 45%
|
|=================================== | 50%
|
|====================================== | 55%
|
|========================================== | 60%
|
|============================================== | 65%
|
|================================================= | 70%
|
|==================================================== | 75%
|
|======================================================== | 80%
|
|============================================================ | 85%
|
|=============================================================== | 90%[1] "markers"
[1] "markers"
|
| | 0%
|
|==== | 5%
|
|======= | 10%
|
|========== | 15%
|
|============== | 20%
|
|================== | 25%
|
|===================== | 30%
|
|======================== | 35%
|
|============================ | 40%
|
|================================ | 45%
|
|=================================== | 50%
|
|====================================== | 55%
|
|========================================== | 60%
|
|============================================== | 65%
|
|================================================= | 70%
|
|==================================================== | 75%
|
|======================================================== | 80%
|
|============================================================ | 85%
|
|=============================================================== | 90%[1] "xx"
[1] "xx"
|
| | 0%
|
|==== | 5%
|
|======= | 10%
|
|========== | 15%
|
|============== | 20%
|
|================== | 25%
|
|===================== | 30%
|
|======================== | 35%
|
|============================ | 40%
|
|================================ | 45%
|
|=================================== | 50%
|
|====================================== | 55%
|
|========================================== | 60%
|
|============================================== | 65%
|
|================================================= | 70%
|
|==================================================== | 75%
|
|======================================================== | 80%
|
|============================================================ | 85%
|
|=============================================================== | 90%[1] "xx"
[1] "xx"
|
| | 0%
|
|==== | 5%
|
|======= | 10%
|
|========== | 15%
|
|============== | 20%
|
|================== | 25%
|
|===================== | 30%
|
|======================== | 35%
|
|============================ | 40%
|
|================================ | 45%
|
|=================================== | 50%
|
|====================================== | 55%
|
|========================================== | 60%
|
|============================================== | 65%
|
|================================================= | 70%
|
|==================================================== | 75%
|
|======================================================== | 80%
|
|============================================================ | 85%
|
|=============================================================== | 90%[1] "markers"
[1] "markers"
[1] "markers"
|
| | 0%
|
|============== | 20%
|
|============================ | 40%
|
|========================================== | 60%[1] "markers"
[1] "markers"
|
| | 0%
|
|============== | 20%
|
|============================ | 40%
|
|========================================== | 60%[1] "markers"
[1] "markers"
|
| | 0%
|
|============== | 20%
|
|============================ | 40%
|
|========================================== | 60%[1] "markers"
[1] "markers"
|
| | 0%
|
|============== | 20%
|
|============================ | 40%
|
|========================================== | 60%[1] "markers"
[1] "markers"
[1] "markers"
|
| | 0%
|
|======= | 10%
|
|============== | 20%
|
|===================== | 30%
|
|============================ | 40%
|
|=================================== | 50%
|
|========================================== | 60%
|
|================================================= | 70%
|
|======================================================== | 80%[1] "markers"
[1] "markers"
|
| | 0%
|
|======= | 10%
|
|============== | 20%
|
|===================== | 30%
|
|============================ | 40%
|
|=================================== | 50%
|
|========================================== | 60%
|
|================================================= | 70%
|
|======================================================== | 80%[1] "markers"
[1] "markers"
|
| | 0%
|
|======= | 10%
|
|============== | 20%
|
|===================== | 30%
|
|============================ | 40%
|
|=================================== | 50%
|
|========================================== | 60%
|
|================================================= | 70%
|
|======================================================== | 80%[1] "markers"
[1] "markers"
|
| | 0%
|
|======= | 10%
|
|============== | 20%
|
|===================== | 30%
|
|============================ | 40%
|
|=================================== | 50%
|
|========================================== | 60%
|
|================================================= | 70%
|
|======================================================== | 80%[1] "markers"
[1] "markers"
|
| | 0%
|
|======= | 10%
|
|============== | 20%
|
|===================== | 30%
|
|============================ | 40%
|
|=================================== | 50%
|
|========================================== | 60%
|
|================================================= | 70%
|
|======================================================== | 80%[1] "markers"
[1] "markers"
|
| | 0%
|
|======= | 10%
|
|============== | 20%
|
|===================== | 30%
|
|============================ | 40%
|
|=================================== | 50%
|
|========================================== | 60%
|
|================================================= | 70%
|
|======================================================== | 80%[1] "markers"
[1] "markers"
[1] "markers"
[1] "markers"
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 36 ]
>
> proc.time()
user system elapsed
187.895 3.235 191.264
bandle.Rcheck/bandle-Ex.timings
| name | user | system | elapsed | |
| bandle-EFDR | 16.037 | 0.372 | 16.409 | |
| bandle-cpp | 0.000 | 0.000 | 0.001 | |
| bandle-differentiallocalisation | 48.091 | 0.391 | 48.485 | |
| bandle-gp | 0.000 | 0.000 | 0.001 | |
| bandle-gpfit | 31.951 | 0.191 | 32.143 | |
| bandle-internal | 0.714 | 0.005 | 0.718 | |
| bandle-meanOrganelle | 0.04 | 0.00 | 0.04 | |
| bandle-plots-convergence | 13.395 | 0.131 | 13.527 | |
| bandle-plots-prob | 12.081 | 0.052 | 12.132 | |
| bandle-plots-spatial | 0.001 | 0.000 | 0.001 | |
| bandle-plots-translocations-table | 13.253 | 0.040 | 13.293 | |
| bandle-plots-translocations | 15.777 | 0.088 | 15.865 | |
| bandle-predict | 16.029 | 0.060 | 16.089 | |
| bandle-prior | 9.444 | 0.276 | 9.720 | |
| bandle-process | 15.374 | 0.044 | 15.419 | |
| bandle-sim | 0.709 | 0.008 | 0.717 | |
| bandle | 22.321 | 0.108 | 22.429 | |
| method-mr | 3.370 | 0.036 | 3.407 | |