Back to Build/check report for BioC 3.17: simplified long |
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This page was generated on 2023-03-01 07:38:38 -0000 (Wed, 01 Mar 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4266 |
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To the developers/maintainers of the conumee package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/conumee.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 403/2171 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
conumee 1.33.0 (landing page) Volker Hovestadt
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | TIMEOUT | |||||||||
Package: conumee |
Version: 1.33.0 |
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:conumee.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings conumee_1.33.0.tar.gz |
StartedAt: 2023-02-28 00:21:45 -0000 (Tue, 28 Feb 2023) |
EndedAt: 2023-02-28 01:01:45 -0000 (Tue, 28 Feb 2023) |
EllapsedTime: 2400.0 seconds |
RetCode: None |
Status: TIMEOUT |
CheckDir: conumee.Rcheck |
Warnings: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:conumee.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings conumee_1.33.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/conumee.Rcheck’ * using R Under development (unstable) (2023-01-14 r83615) * using platform: aarch64-unknown-linux-gnu (64-bit) * R was compiled by gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 * running under: Ubuntu 22.04.1 LTS * using session charset: UTF-8 * checking for file ‘conumee/DESCRIPTION’ ... OK * this is package ‘conumee’ version ‘1.33.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .BBSoptions These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘conumee’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE CNV.load,GenomicRatioSet: no visible global function definition for ‘assays’ CNV.load,matrix: no visible binding for global variable ‘anno’ Undefined global functions or variables: anno assays * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed CNV.genomeplot 115.426 1.568 116.997 CNV.detailplot_wrap 107.173 1.523 108.698 CNV.write 105.865 1.910 107.777 CNV.detailplot 102.887 1.552 104.440 CNV.analysis-class 100.432 1.560 102.016 CNV.segment 99.606 0.884 100.492 CNV.fit 57.811 0.548 58.361 CNV.bin 47.614 0.500 48.114 CNV.detail 47.404 0.624 48.028 CNV.create_anno 41.842 0.600 42.441 CNV.anno-class 40.970 0.756 41.725 read.450k.url 8.503 1.012 30.573 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘conumee.Rmd’ using ‘UTF-8’... OK NONE * checking re-building of vignette outputs ...
conumee.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL conumee ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘conumee’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (conumee)
conumee.Rcheck/conumee-Ex.timings
name | user | system | elapsed | |
CNV.analysis-class | 100.432 | 1.560 | 102.016 | |
CNV.anno-class | 40.970 | 0.756 | 41.725 | |
CNV.bin | 47.614 | 0.500 | 48.114 | |
CNV.create_anno | 41.842 | 0.600 | 42.441 | |
CNV.data-class | 2.090 | 0.063 | 2.154 | |
CNV.detail | 47.404 | 0.624 | 48.028 | |
CNV.detailplot | 102.887 | 1.552 | 104.440 | |
CNV.detailplot_wrap | 107.173 | 1.523 | 108.698 | |
CNV.fit | 57.811 | 0.548 | 58.361 | |
CNV.genomeplot | 115.426 | 1.568 | 116.997 | |
CNV.load | 3.292 | 0.052 | 3.344 | |
CNV.segment | 99.606 | 0.884 | 100.492 | |
CNV.write | 105.865 | 1.910 | 107.777 | |
read.450k.url | 8.503 | 1.012 | 30.573 | |