Build/check report for BioC 3.17 - CHECK results for graper on kunpeng1

Hostname	OS	Arch (*)	R version	Installed pkgs
kunpeng1	Linux (Ubuntu 22.04.1 LTS)	aarch64	R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences"	4266
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

Package: graper

Version: 1.15.0

Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings graper_1.15.0.tar.gz

StartedAt: 2023-02-28 05:07:48 -0000 (Tue, 28 Feb 2023)

EndedAt: 2023-02-28 05:09:41 -0000 (Tue, 28 Feb 2023)

EllapsedTime: 113.1 seconds

RetCode: 0

Status: OK

CheckDir: graper.Rcheck

Warnings: 0

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###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings graper_1.15.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/graper.Rcheck’
* using R Under development (unstable) (2023-01-14 r83615)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.15.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* used C++ compiler: ‘g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
* checking installed package size ... NOTE
  installed size is  6.1Mb
  sub-directories of 1Mb or more:
    libs   6.0Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘example_linear.Rmd’ using ‘UTF-8’... OK
  ‘example_logistic.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.17-bioc/meat/graper.Rcheck/00check.log’
for details.

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL graper
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’
* installing *source* package ‘graper’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
using C++11
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c fit_graper.cpp -o fit_graper.o
In file included from /home/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from /home/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from /home/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from /home/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from /home/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
                 from /home/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
                 from /home/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/lexical_cast.hpp:30,
                 from /home/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/math/tools/convert_from_string.hpp:15,
                 from /home/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/math/constants/constants.hpp:14,
                 from /home/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/math/special_functions/digamma.hpp:20,
                 from graper_linear_dense_ff.h:2,
                 from fit_graper.cpp:4:
/home/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
  194 | failed ************ (Pred::************
      |                     ^~~~~~~~~~~~~~~~~~~
  195 |       assert_arg( void (*)(Pred), typename assert_arg_pred<Pred>::type )
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  196 |     );
      |     ~                
/home/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses
  194 | failed ************ (Pred::************
      |                     ^~~~~~~~~~~~~~~~~~~
      |                     -
  195 |       assert_arg( void (*)(Pred), typename assert_arg_pred<Pred>::type )
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  196 |     );
      |     ~                
      |     -
/home/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
  199 | failed ************ (boost::mpl::not_<Pred>::************
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  200 |       assert_not_arg( void (*)(Pred), typename assert_arg_pred_not<Pred>::type )
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  201 |     );
      |     ~                
/home/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses
  199 | failed ************ (boost::mpl::not_<Pred>::************
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                     -
  200 |       assert_not_arg( void (*)(Pred), typename assert_arg_pred_not<Pred>::type )
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  201 |     );
      |     ~                
      |     -
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.17-bioc/R/lib -L/usr/local/lib -o graper.so RcppExports.o fit_graper.o -llapack -L/home/biocbuild/bbs-3.17-bioc/R/lib -lRblas -lgfortran -lm -L/home/biocbuild/bbs-3.17-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.17-bioc/R/library/00LOCK-graper/00new/graper/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (graper)


R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(graper)
> 
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-872.638
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-589.957
ELB improved by 282.681

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-526.934
ELB improved by 63.0232

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-482.9
ELB improved by 44.0339

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-462.355
ELB improved by 20.5451

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.32
ELB improved by 8.03533

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.921
ELB improved by 4.3987

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.63
ELB improved by 3.29095

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.753
ELB improved by 2.8765

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.089
ELB improved by 2.66456

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.597
ELB improved by 2.49184

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.29
ELB improved by 2.30707

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.191
ELB improved by 2.09878

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.322
ELB improved by 1.86919

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.699
ELB improved by 1.6227

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.332
ELB improved by 1.36714

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.215
ELB improved by 1.11752

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.323
ELB improved by 0.891736

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.618
ELB improved by 0.705393

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.052
ELB improved by 0.565234

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.585
ELB improved by 0.467044

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.184
ELB improved by 0.401177

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.826
ELB improved by 0.358074

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.496
ELB improved by 0.33044

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.182
ELB improved by 0.313302

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.879
ELB improved by 0.303424

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.58
ELB improved by 0.298705

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.282
ELB improved by 0.297755

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.983
ELB improved by 0.299619

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.679
ELB improved by 0.303618

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.37
ELB improved by 0.309246

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.054
ELB improved by 0.316111

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.73
ELB improved by 0.323892

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.398
ELB improved by 0.33231

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.056
ELB improved by 0.341133

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.706
ELB improved by 0.350226

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.347
ELB improved by 0.359627

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.977
ELB improved by 0.369578

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.597
ELB improved by 0.380462

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.204
ELB improved by 0.392664

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.797
ELB improved by 0.406421

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.376
ELB improved by 0.421662

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.938
ELB improved by 0.437792

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.485
ELB improved by 0.45333

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.019
ELB improved by 0.465552

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.549
ELB improved by 0.470531

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.084
ELB improved by 0.46417

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.64
ELB improved by 0.44413

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.229
ELB improved by 0.411369

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.859
ELB improved by 0.370098

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.533
ELB improved by 0.326283

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.247
ELB improved by 0.285756

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.994
ELB improved by 0.252772

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.765
ELB improved by 0.229208

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.551
ELB improved by 0.214124

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.347
ELB improved by 0.203753

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.154
ELB improved by 0.192928

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.976
ELB improved by 0.178202

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.816
ELB improved by 0.160175

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.673
ELB improved by 0.142762

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.542
ELB improved by 0.130639

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.415
ELB improved by 0.127099

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.283
ELB improved by 0.132495

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.14
ELB improved by 0.142249

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.994
ELB improved by 0.14679

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.855
ELB improved by 0.138169

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.738
ELB improved by 0.117718

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.644
ELB improved by 0.0932406

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.573
ELB improved by 0.071161

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.519
ELB improved by 0.0539035

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.478
ELB improved by 0.0413348

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.446
ELB improved by 0.0324315

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.42
ELB improved by 0.0261312

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.398
ELB improved by 0.0216054

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.38
ELB improved by 0.0182775

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.364
ELB improved by 0.0157653

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.35
ELB improved by 0.0138192

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.338
ELB improved by 0.0122755

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.327
ELB improved by 0.0110251

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.317
ELB improved by 0.0099941

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-869.819
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-564.052
ELB improved by 305.767

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-502.429
ELB improved by 61.6233

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-468.319
ELB improved by 34.1102

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-455.251
ELB improved by 13.0679

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.602
ELB improved by 5.64946

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.097
ELB improved by 3.50494

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.187
ELB improved by 2.90981

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.362
ELB improved by 2.82532

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.405
ELB improved by 2.95624

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.186
ELB improved by 3.21942

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.59
ELB improved by 3.59607

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.524
ELB improved by 4.06612

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422
ELB improved by 4.52321

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.329
ELB improved by 4.67126

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.159
ELB improved by 4.16989

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.03
ELB improved by 3.12884

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.958
ELB improved by 2.07225

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.633
ELB improved by 1.32547

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.756
ELB improved by 0.876606

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.141
ELB improved by 0.614843

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.685
ELB improved by 0.456124

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.332
ELB improved by 0.353523

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.049
ELB improved by 0.282861

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.817
ELB improved by 0.231626

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.624
ELB improved by 0.193027

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.461
ELB improved by 0.163113

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.322
ELB improved by 0.13942

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.201
ELB improved by 0.120317

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.097
ELB improved by 0.104683

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.005
ELB improved by 0.0917206

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.924
ELB improved by 0.0808533

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.852
ELB improved by 0.0716542

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.789
ELB improved by 0.0638021

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.732
ELB improved by 0.0570508

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.68
ELB improved by 0.051209

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.634
ELB improved by 0.0461254

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.593
ELB improved by 0.0416794

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.555
ELB improved by 0.0377732

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.52
ELB improved by 0.034327

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.489
ELB improved by 0.0312751

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.461
ELB improved by 0.0285629

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.434
ELB improved by 0.0261448

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.41
ELB improved by 0.0239824

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.388
ELB improved by 0.0220432

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.368
ELB improved by 0.0202996

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.349
ELB improved by 0.018728

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.332
ELB improved by 0.0173082

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.316
ELB improved by 0.0160227

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.301
ELB improved by 0.0148565

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.287
ELB improved by 0.0137964

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.275
ELB improved by 0.0128311

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.263
ELB improved by 0.0119504

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.251
ELB improved by 0.0111458

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.241
ELB improved by 0.0104094

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.231
ELB improved by 0.00973449

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-872.675
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-559.431
ELB improved by 313.244

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-497.067
ELB improved by 62.3634

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-460.429
ELB improved by 36.6378

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.859
ELB improved by 15.5704

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.986
ELB improved by 6.87352

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.74
ELB improved by 4.24602

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.264
ELB improved by 3.47508

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.869
ELB improved by 3.39592

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.185
ELB improved by 3.68358

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.006
ELB improved by 4.17924

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.321
ELB improved by 4.68483

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.426
ELB improved by 4.89504

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.844
ELB improved by 4.58145

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.954
ELB improved by 3.89001

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.827
ELB improved by 3.12771

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.548
ELB improved by 2.27905

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.093
ELB improved by 1.45496

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.183
ELB improved by 0.910091

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.567
ELB improved by 0.615869

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.102
ELB improved by 0.464445

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.717
ELB improved by 0.385376

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.374
ELB improved by 0.342921

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.054
ELB improved by 0.320114

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.745
ELB improved by 0.308961

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.439
ELB improved by 0.305696

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.131
ELB improved by 0.308599

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.814
ELB improved by 0.316912

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.484
ELB improved by 0.330164

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.136
ELB improved by 0.347842

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.766
ELB improved by 0.369887

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.367
ELB improved by 0.398362

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.928
ELB improved by 0.43934

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.425
ELB improved by 0.503165

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.824
ELB improved by 0.600579

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.099
ELB improved by 0.72504

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.276
ELB improved by 0.822932

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.438
ELB improved by 0.838279

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.649
ELB improved by 0.789332

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.939
ELB improved by 0.710241

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.314
ELB improved by 0.624765

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.769
ELB improved by 0.545017

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.298
ELB improved by 0.47037

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.9
ELB improved by 0.398702

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.569
ELB improved by 0.330527

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.301
ELB improved by 0.267867

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.088
ELB improved by 0.212804

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.922
ELB improved by 0.166611

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.792
ELB improved by 0.129421

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.692
ELB improved by 0.100417

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.614
ELB improved by 0.0782694

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.552
ELB improved by 0.0615481

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.503
ELB improved by 0.0489672

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.464
ELB improved by 0.039479

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.431
ELB improved by 0.0322776

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.405
ELB improved by 0.0267633

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.382
ELB improved by 0.0224972

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.363
ELB improved by 0.01916

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.347
ELB improved by 0.0165193

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.332
ELB improved by 0.0144057

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.319
ELB improved by 0.0126945

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.308
ELB improved by 0.0112936

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.298
ELB improved by 0.0101342

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.289
ELB improved by 0.00916463

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-848.526
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-586.274
ELB improved by 262.252

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-527.104
ELB improved by 59.1697

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-475.187
ELB improved by 51.9171

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.153
ELB improved by 31.0344

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.061
ELB improved by 13.0914

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.215
ELB improved by 5.8467

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.699
ELB improved by 3.51607

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.304
ELB improved by 2.39472

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.481
ELB improved by 1.82288

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.948
ELB improved by 1.53318

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.574
ELB improved by 1.37353

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.304
ELB improved by 1.27003

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.113
ELB improved by 1.19073

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.99
ELB improved by 1.12369

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.925
ELB improved by 1.06526

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.91
ELB improved by 1.01453

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.939
ELB improved by 0.971141

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.004
ELB improved by 0.934579

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.101
ELB improved by 0.903741

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.224
ELB improved by 0.876308

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.376
ELB improved by 0.848461

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.56
ELB improved by 0.815652

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.786
ELB improved by 0.774465

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.061
ELB improved by 0.724354

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.393
ELB improved by 0.667816

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.784
ELB improved by 0.608994

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.232
ELB improved by 0.55224

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.731
ELB improved by 0.501618

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.27
ELB improved by 0.46083

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.837
ELB improved by 0.432852

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.418
ELB improved by 0.419375

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.997
ELB improved by 0.420546

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.562
ELB improved by 0.43515

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.101
ELB improved by 0.460996

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.606
ELB improved by 0.495247

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.071
ELB improved by 0.534653

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.495
ELB improved by 0.575707

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.881
ELB improved by 0.614675

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.233
ELB improved by 0.647523

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.563
ELB improved by 0.670023

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.885
ELB improved by 0.678318

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.215
ELB improved by 0.669878

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.571
ELB improved by 0.6443

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.967
ELB improved by 0.603367

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.417
ELB improved by 0.550304

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.928
ELB improved by 0.488967

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.504
ELB improved by 0.423694

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.145
ELB improved by 0.359265

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.845
ELB improved by 0.300008

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.596
ELB improved by 0.24856

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.391
ELB improved by 0.205602

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.22
ELB improved by 0.170539

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.078
ELB improved by 0.142325

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.958
ELB improved by 0.119935

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.855
ELB improved by 0.102545

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.766
ELB improved by 0.0895632

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.685
ELB improved by 0.0806541

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.609
ELB improved by 0.0757988

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.534
ELB improved by 0.0754249

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.453
ELB improved by 0.0805897

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.36
ELB improved by 0.0930213

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.246
ELB improved by 0.114253

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.103
ELB improved by 0.142701

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.932
ELB improved by 0.171466

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.734
ELB improved by 0.197448

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.499
ELB improved by 0.235458

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.199
ELB improved by 0.30019

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.851
ELB improved by 0.347703

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.548
ELB improved by 0.302902

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.341
ELB improved by 0.207107

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.213
ELB improved by 0.128572

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.134
ELB improved by 0.0784279

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.084
ELB improved by 0.0501571

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.049
ELB improved by 0.0351598

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.022
ELB improved by 0.0269974

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385
ELB improved by 0.0221445

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.981
ELB improved by 0.018933

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.964
ELB improved by 0.0166004

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.949
ELB improved by 0.0147876

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.936
ELB improved by 0.0133141

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.924
ELB improved by 0.0120819

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.913
ELB improved by 0.0110321

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.903
ELB improved by 0.0101268

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.893
ELB improved by 0.00933932

ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
> 
> proc.time()
   user  system elapsed 
  2.847   0.159   2.991

name	user	system	elapsed
coef.graper	0.076	0.016	0.092
getPIPs	0.083	0.004	0.087
graper	0.109	0.028	0.137
makeExampleData	0.012	0.000	0.012
makeExampleDataWithUnequalGroups	0.016	0.000	0.016
plotELBO	0.276	0.016	0.293
plotGroupPenalties	1.075	0.044	1.119
plotPosterior	0.673	0.044	0.718
predict.graper	3.161	0.072	3.236
print.graper	0.071	0.016	0.087

CHECK results for graper on kunpeng1

Summary

Command output

Installation output

Tests output

Example timings