Back to Build/check report for BioC 3.17:   simplified   long
ABCDEFG[H]IJKLMNOPQRSTUVWXYZ

This page was generated on 2023-03-01 07:38:42 -0000 (Wed, 01 Mar 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" 4266
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for h5vc on kunpeng1


To the developers/maintainers of the h5vc package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/h5vc.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 876/2171HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
h5vc 2.33.0  (landing page)
Paul Theodor Pyl
Snapshot Date: 2023-02-27 07:53:22 -0000 (Mon, 27 Feb 2023)
git_url: https://git.bioconductor.org/packages/h5vc
git_branch: master
git_last_commit: a9ce41f
git_last_commit_date: 2022-11-01 15:08:58 -0000 (Tue, 01 Nov 2022)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    ERROR  skipped

Summary

Package: h5vc
Version: 2.33.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data h5vc
StartedAt: 2023-02-27 14:25:12 -0000 (Mon, 27 Feb 2023)
EndedAt: 2023-02-27 14:26:15 -0000 (Mon, 27 Feb 2023)
EllapsedTime: 63.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data h5vc
###
##############################################################################
##############################################################################


* checking for file ‘h5vc/DESCRIPTION’ ... OK
* preparing ‘h5vc’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘h5vc.simple.genome.browser.Rmd’ using rmarkdown
[WARNING] This document format requires a nonempty <title> element.
  Defaulting to 'h5vc.simple.genome.browser.knit' as the title.
  To specify a title, use 'title' in metadata or --metadata title="...".
--- finished re-building ‘h5vc.simple.genome.browser.Rmd’

--- re-building ‘h5vc.tour.Rmd’ using rmarkdown
Quitting from lines 234-254 (h5vc.tour.Rmd) 
Error: processing vignette 'h5vc.tour.Rmd' failed with diagnostics:
Timeout was reached: [www.ensembl.org:80] Operation timed out after 10000 milliseconds with 276342 bytes received
--- failed re-building ‘h5vc.tour.Rmd’

SUMMARY: processing the following file failed:
  ‘h5vc.tour.Rmd’

Error: Vignette re-building failed.
Execution halted