| Back to Build/check report for BioC 3.17: simplified long | 
  | 
This page was generated on 2023-03-01 07:38:42 -0000 (Wed, 01 Mar 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs | 
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4266 | 
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| 
To the developers/maintainers of the iCheck package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/iCheck.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page.  | 
| Package 934/2171 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| iCheck 1.29.0  (landing page) Weiliang Qiu 
  | kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
| Package: iCheck | 
| Version: 1.29.0 | 
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:iCheck.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings iCheck_1.29.0.tar.gz | 
| StartedAt: 2023-02-28 05:57:48 -0000 (Tue, 28 Feb 2023) | 
| EndedAt: 2023-02-28 06:04:44 -0000 (Tue, 28 Feb 2023) | 
| EllapsedTime: 415.5 seconds | 
| RetCode: 0 | 
| Status: OK | 
| CheckDir: iCheck.Rcheck | 
| Warnings: 0 | 
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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:iCheck.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings iCheck_1.29.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/iCheck.Rcheck’
* using R Under development (unstable) (2023-01-14 r83615)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* checking for file ‘iCheck/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘iCheck’ version ‘1.29.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘iCheck’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘iCheck.Rnw’... OK
 OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
iCheck.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL iCheck ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘iCheck’ ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading No methods found in package ‘RSQLite’ for request: ‘dbListFields’ when loading ‘lumi’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location No methods found in package ‘RSQLite’ for request: ‘dbListFields’ when loading ‘lumi’ ** testing if installed package can be loaded from final location No methods found in package ‘RSQLite’ for request: ‘dbListFields’ when loading ‘lumi’ ** testing if installed package keeps a record of temporary installation path * DONE (iCheck)
iCheck.Rcheck/iCheck-Ex.timings
| name | user | system | elapsed | |
| LumiBatch2Table | 0.118 | 0.000 | 0.119 | |
| R2PlotFunc | 0.447 | 0.024 | 0.427 | |
| boxPlots | 0.194 | 0.004 | 0.197 | |
| densityPlots | 0.100 | 0.008 | 0.109 | |
| genSimData.BayesNormal | 1.16 | 0.10 | 1.26 | |
| getPCAFunc | 0.059 | 0.000 | 0.058 | |
| glmWrapper | 0.464 | 0.016 | 0.480 | |
| lkhrWrapper | 0.596 | 0.072 | 0.668 | |
| lmFitPaired | 0.045 | 0.016 | 0.061 | |
| lmFitWrapper | 0.050 | 0.008 | 0.058 | |
| pca2DPlot | 0.081 | 0.020 | 0.102 | |
| pca3DPlot | 0.056 | 0.012 | 0.068 | |
| plotCurves | 0.046 | 0.004 | 0.050 | |
| plotQCCurves | 0.078 | 0.008 | 0.085 | |
| plotSamplep95p05 | 0.082 | 0.004 | 0.085 | |
| quantilePlot | 0.108 | 0.020 | 0.110 | |
| scatterPlots | 0.123 | 0.016 | 0.138 | |
| sortExpressionSet | 0.074 | 0.000 | 0.074 | |