Back to Build/check report for BioC 3.17: simplified long |
|
This page was generated on 2023-03-01 07:38:43 -0000 (Wed, 01 Mar 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4266 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the interacCircos package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/interacCircos.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 970/2171 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
interacCircos 1.9.0 (landing page) Zhe Cui
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
Package: interacCircos |
Version: 1.9.0 |
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:interacCircos.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings interacCircos_1.9.0.tar.gz |
StartedAt: 2023-02-28 06:22:47 -0000 (Tue, 28 Feb 2023) |
EndedAt: 2023-02-28 06:23:29 -0000 (Tue, 28 Feb 2023) |
EllapsedTime: 42.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: interacCircos.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:interacCircos.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings interacCircos_1.9.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/interacCircos.Rcheck’ * using R Under development (unstable) (2023-01-14 r83615) * using platform: aarch64-unknown-linux-gnu (64-bit) * R was compiled by gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 * running under: Ubuntu 22.04.1 LTS * using session charset: UTF-8 * checking for file ‘interacCircos/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘interacCircos’ version ‘1.9.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘interacCircos’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘interacCircos.Rmd’ using ‘UTF-8’... OK NONE * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: OK
interacCircos.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL interacCircos ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘interacCircos’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (interacCircos)
interacCircos.Rcheck/interacCircos-Ex.timings
name | user | system | elapsed | |
Circos | 0.270 | 0.013 | 0.295 | |
CircosArc | 0.097 | 0.020 | 0.117 | |
CircosAuxLine | 0.083 | 0.016 | 0.099 | |
CircosBackground | 0.098 | 0.008 | 0.105 | |
CircosBubble | 0.508 | 0.008 | 0.516 | |
CircosChord | 0.095 | 0.012 | 0.108 | |
CircosChord.p | 0.098 | 0.008 | 0.106 | |
CircosCnv | 0.316 | 0.012 | 0.328 | |
CircosGene | 0.111 | 0.008 | 0.118 | |
CircosHeatmap | 0.495 | 0.020 | 0.515 | |
CircosHistogram | 0.200 | 0.012 | 0.211 | |
CircosLegend | 0.088 | 0.016 | 0.103 | |
CircosLine | 0.452 | 0.012 | 0.464 | |
CircosLink | 0.095 | 0.020 | 0.115 | |
CircosLollipop | 0.254 | 0.012 | 0.267 | |
CircosScatter | 1.461 | 0.016 | 1.478 | |
CircosSnp | 0.682 | 0.032 | 0.714 | |
CircosText | 0.090 | 0.016 | 0.107 | |
CircosWig | 1.435 | 0.008 | 1.444 | |