| Back to Build/check report for BioC 3.17: simplified long |
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This page was generated on 2023-03-01 07:38:43 -0000 (Wed, 01 Mar 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4266 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the maftools package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/maftools.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1068/2171 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| maftools 2.15.0 (landing page) Anand Mayakonda
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | ERROR | skipped | |||||||||
| Package: maftools |
| Version: 2.15.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data maftools |
| StartedAt: 2023-02-27 14:57:45 -0000 (Mon, 27 Feb 2023) |
| EndedAt: 2023-02-27 15:02:13 -0000 (Mon, 27 Feb 2023) |
| EllapsedTime: 267.4 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data maftools
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* checking for file ‘maftools/DESCRIPTION’ ... OK
* preparing ‘maftools’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘cancer_hotspots.Rmd’ using rmarkdown
--- finished re-building ‘cancer_hotspots.Rmd’
--- re-building ‘cnv_analysis.Rmd’ using rmarkdown
Could not fetch https://user-images.githubusercontent.com/8164062/160853684-85021668-a515-4e3d-8ccb-dddf992098d9.png
HttpExceptionRequest Request {
host = "user-images.githubusercontent.com"
port = 443
secure = True
requestHeaders = []
path = "/8164062/160853684-85021668-a515-4e3d-8ccb-dddf992098d9.png"
queryString = ""
method = "GET"
proxy = Nothing
rawBody = False
redirectCount = 10
responseTimeout = ResponseTimeoutDefault
requestVersion = HTTP/1.1
}
ResponseTimeout
Error: processing vignette 'cnv_analysis.Rmd' failed with diagnostics:
pandoc document conversion failed with error 61
--- failed re-building ‘cnv_analysis.Rmd’
--- re-building ‘maftools.Rmd’ using rmarkdown
Warning in doTryCatch(return(expr), name, parentenv, handler) :
"axes" is not a graphical parameter
Warning in doTryCatch(return(expr), name, parentenv, handler) :
"axes" is not a graphical parameter
Warning in doTryCatch(return(expr), name, parentenv, handler) :
"axes" is not a graphical parameter
--- finished re-building ‘maftools.Rmd’
--- re-building ‘oncoplots.Rmd’ using rmarkdown
--- finished re-building ‘oncoplots.Rmd’
SUMMARY: processing the following file failed:
‘cnv_analysis.Rmd’
Error: Vignette re-building failed.
Execution halted