| Back to Build/check report for BioC 3.17: simplified long | 
  | 
This page was generated on 2023-03-01 07:38:45 -0000 (Wed, 01 Mar 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs | 
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4266 | 
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| 
To the developers/maintainers of the mirTarRnaSeq package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mirTarRnaSeq.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page.  | 
| Package 1213/2171 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| mirTarRnaSeq 1.7.0  (landing page) Mercedeh Movassagh 
  | kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
| Package: mirTarRnaSeq | 
| Version: 1.7.0 | 
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:mirTarRnaSeq.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings mirTarRnaSeq_1.7.0.tar.gz | 
| StartedAt: 2023-02-28 08:33:52 -0000 (Tue, 28 Feb 2023) | 
| EndedAt: 2023-02-28 08:39:19 -0000 (Tue, 28 Feb 2023) | 
| EllapsedTime: 327.4 seconds | 
| RetCode: 0 | 
| Status: OK | 
| CheckDir: mirTarRnaSeq.Rcheck | 
| Warnings: 0 | 
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### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:mirTarRnaSeq.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings mirTarRnaSeq_1.7.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/mirTarRnaSeq.Rcheck’
* using R Under development (unstable) (2023-01-14 r83615)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* checking for file ‘mirTarRnaSeq/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘mirTarRnaSeq’ version ‘1.7.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘mirTarRnaSeq’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: ‘ggplot2’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘mirTarRnaSeq.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.17-bioc/meat/mirTarRnaSeq.Rcheck/00check.log’
for details.
mirTarRnaSeq.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL mirTarRnaSeq ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘mirTarRnaSeq’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mirTarRnaSeq)
mirTarRnaSeq.Rcheck/mirTarRnaSeq-Ex.timings
| name | user | system | elapsed | |
| combiner | 0.009 | 0.000 | 0.009 | |
| corMirnaRna | 0.122 | 0.004 | 0.126 | |
| corMirnaRnaMiranda | 0.238 | 0.015 | 0.254 | |
| downloadMirandaFile | 0 | 0 | 0 | |
| drawCorPlot | 0 | 0 | 0 | |
| drawInterPlots | 0.027 | 0.000 | 0.027 | |
| fdrSig | 0.694 | 0.015 | 0.710 | |
| finInterResult | 0.001 | 0.000 | 0.001 | |
| geneVari | 0 | 0 | 0 | |
| getInputSpecies | 0.397 | 0.011 | 0.410 | |
| glm_gaussian | 0.000 | 0.000 | 0.001 | |
| glm_multi | 0.000 | 0.000 | 0.001 | |
| glm_nb | 0.000 | 0.000 | 0.001 | |
| glm_poisson | 0 | 0 | 0 | |
| glm_zeroinfl | 0.000 | 0.000 | 0.001 | |
| glm_zeroinfl_negbin | 0 | 0 | 0 | |
| glm_zeroinfl_poisson | 0 | 0 | 0 | |
| importMirandaFile | 0 | 0 | 0 | |
| makeFormulaRightSide | 0 | 0 | 0 | |
| miRanComp | 0.039 | 0.000 | 0.039 | |
| miRandaIntersect | 0.017 | 0.004 | 0.021 | |
| mirRnaDensityCor | 0.032 | 0.008 | 0.039 | |
| mirRnaDensityInter | 0 | 0 | 0 | |
| mirRnaHeatmap | 0.958 | 0.008 | 0.966 | |
| mirRnaHeatmapDiff | 0.113 | 0.000 | 0.112 | |
| mirandaIntersectInter | 0.017 | 0.000 | 0.017 | |
| modelAIC | 0.066 | 0.000 | 0.066 | |
| modelCoefficients | 0.000 | 0.001 | 0.001 | |
| modelData | 0.000 | 0.000 | 0.001 | |
| modelModelName | 0 | 0 | 0 | |
| modelModelPvalue | 0.001 | 0.000 | 0.001 | |
| modelTermPvalues | 0.001 | 0.000 | 0.001 | |
| modelsFilter | 0 | 0 | 0 | |
| one2OneRnaMiRNA | 0 | 0 | 0 | |
| plotFit | 0.015 | 0.003 | 0.020 | |
| plotResiduals | 0.008 | 0.000 | 0.008 | |
| plotTerms | 0.003 | 0.000 | 0.003 | |
| runAllMirnaModels | 0.636 | 0.012 | 0.648 | |
| runModels | 0.637 | 0.008 | 0.645 | |
| sampCorRnaMirna | 1.126 | 0.048 | 1.174 | |
| threshSig | 0 | 0 | 0 | |
| threshSigInter | 0.002 | 0.000 | 0.002 | |
| twoTimePoint | 0 | 0 | 0 | |
| twoTimePointSamp | 0 | 0 | 0 | |
| tzTrans | 0.007 | 0.000 | 0.007 | |