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This page was generated on 2023-03-01 07:38:45 -0000 (Wed, 01 Mar 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" 4266
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for mirTarRnaSeq on kunpeng1


To the developers/maintainers of the mirTarRnaSeq package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mirTarRnaSeq.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1213/2171HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
mirTarRnaSeq 1.7.0  (landing page)
Mercedeh Movassagh
Snapshot Date: 2023-02-27 07:53:22 -0000 (Mon, 27 Feb 2023)
git_url: https://git.bioconductor.org/packages/mirTarRnaSeq
git_branch: master
git_last_commit: dfd043e
git_last_commit_date: 2022-11-01 15:24:32 -0000 (Tue, 01 Nov 2022)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    OK    OK  

Summary

Package: mirTarRnaSeq
Version: 1.7.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:mirTarRnaSeq.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings mirTarRnaSeq_1.7.0.tar.gz
StartedAt: 2023-02-28 08:33:52 -0000 (Tue, 28 Feb 2023)
EndedAt: 2023-02-28 08:39:19 -0000 (Tue, 28 Feb 2023)
EllapsedTime: 327.4 seconds
RetCode: 0
Status:   OK  
CheckDir: mirTarRnaSeq.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:mirTarRnaSeq.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings mirTarRnaSeq_1.7.0.tar.gz
###
##############################################################################
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/mirTarRnaSeq.Rcheck’
* using R Under development (unstable) (2023-01-14 r83615)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* checking for file ‘mirTarRnaSeq/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘mirTarRnaSeq’ version ‘1.7.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘mirTarRnaSeq’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: ‘ggplot2’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘mirTarRnaSeq.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.17-bioc/meat/mirTarRnaSeq.Rcheck/00check.log’
for details.



Installation output

mirTarRnaSeq.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL mirTarRnaSeq
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’
* installing *source* package ‘mirTarRnaSeq’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mirTarRnaSeq)

Tests output


Example timings

mirTarRnaSeq.Rcheck/mirTarRnaSeq-Ex.timings

nameusersystemelapsed
combiner0.0090.0000.009
corMirnaRna0.1220.0040.126
corMirnaRnaMiranda0.2380.0150.254
downloadMirandaFile000
drawCorPlot000
drawInterPlots0.0270.0000.027
fdrSig0.6940.0150.710
finInterResult0.0010.0000.001
geneVari000
getInputSpecies0.3970.0110.410
glm_gaussian0.0000.0000.001
glm_multi0.0000.0000.001
glm_nb0.0000.0000.001
glm_poisson000
glm_zeroinfl0.0000.0000.001
glm_zeroinfl_negbin000
glm_zeroinfl_poisson000
importMirandaFile000
makeFormulaRightSide000
miRanComp0.0390.0000.039
miRandaIntersect0.0170.0040.021
mirRnaDensityCor0.0320.0080.039
mirRnaDensityInter000
mirRnaHeatmap0.9580.0080.966
mirRnaHeatmapDiff0.1130.0000.112
mirandaIntersectInter0.0170.0000.017
modelAIC0.0660.0000.066
modelCoefficients0.0000.0010.001
modelData0.0000.0000.001
modelModelName000
modelModelPvalue0.0010.0000.001
modelTermPvalues0.0010.0000.001
modelsFilter000
one2OneRnaMiRNA000
plotFit0.0150.0030.020
plotResiduals0.0080.0000.008
plotTerms0.0030.0000.003
runAllMirnaModels0.6360.0120.648
runModels0.6370.0080.645
sampCorRnaMirna1.1260.0481.174
threshSig000
threshSigInter0.0020.0000.002
twoTimePoint000
twoTimePointSamp000
tzTrans0.0070.0000.007