| Back to Build/check report for BioC 3.17: simplified long | 
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This page was generated on 2023-03-01 07:38:46 -0000 (Wed, 01 Mar 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs | 
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4266 | 
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| 
To the developers/maintainers of the nullranges package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/nullranges.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page.  | 
| Package 1360/2171 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| nullranges 1.5.15  (landing page) Michael Love 
  | kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
| Package: nullranges | 
| Version: 1.5.15 | 
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:nullranges.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings nullranges_1.5.15.tar.gz | 
| StartedAt: 2023-02-28 10:03:47 -0000 (Tue, 28 Feb 2023) | 
| EndedAt: 2023-02-28 10:13:51 -0000 (Tue, 28 Feb 2023) | 
| EllapsedTime: 603.8 seconds | 
| RetCode: 0 | 
| Status: OK | 
| CheckDir: nullranges.Rcheck | 
| Warnings: 0 | 
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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:nullranges.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings nullranges_1.5.15.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/nullranges.Rcheck’
* using R Under development (unstable) (2023-01-14 r83615)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* checking for file ‘nullranges/DESCRIPTION’ ... OK
* this is package ‘nullranges’ version ‘1.5.15’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘nullranges’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘bootRanges.Rmd’ using ‘UTF-8’... OK
  ‘matchRanges.Rmd’ using ‘UTF-8’... OK
  ‘matching_ginteractions.Rmd’ using ‘UTF-8’... OK
  ‘matching_granges.Rmd’ using ‘UTF-8’... OK
  ‘matching_pool_set.Rmd’ using ‘UTF-8’... OK
  ‘nullranges.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
nullranges.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL nullranges ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘nullranges’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nullranges)
nullranges.Rcheck/tests/testthat.Rout
R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(nullranges)
> 
> test_check("nullranges")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 9 ]
> 
> proc.time()
   user  system elapsed 
 21.721   1.520  25.757 
nullranges.Rcheck/nullranges-Ex.timings
| name | user | system | elapsed | |
| MatchedDataFrame | 2.205 | 0.032 | 2.224 | |
| MatchedGInteractions | 0.639 | 0.024 | 0.656 | |
| MatchedGRanges | 0.589 | 0.000 | 0.587 | |
| bootRanges | 0.420 | 0.008 | 0.428 | |
| combnCov | 0.004 | 0.000 | 0.004 | |
| covariates | 0.167 | 0.004 | 0.172 | |
| focal | 0.206 | 0.000 | 0.206 | |
| indices | 0.226 | 0.004 | 0.230 | |
| makeExampleMatchedDataSet | 1.192 | 0.000 | 1.192 | |
| matchRanges | 2.699 | 0.092 | 2.889 | |
| matched | 0.172 | 0.004 | 0.175 | |
| matchedClass | 0.201 | 0.004 | 0.205 | |
| matchedData | 0.163 | 0.000 | 0.163 | |
| method | 0.16 | 0.00 | 0.16 | |
| oneRegionSegment | 0.492 | 0.000 | 1.130 | |
| overview | 0.202 | 0.000 | 0.365 | |
| plotCovariate | 4.773 | 0.079 | 4.976 | |
| plotPropensity | 1.739 | 0.080 | 1.811 | |
| plotSegment | 2.122 | 0.029 | 2.153 | |
| pool | 0.148 | 0.004 | 0.149 | |
| reduceSegment | 0.304 | 0.004 | 0.308 | |
| segmentDensity | 0.622 | 0.004 | 0.626 | |
| unmatched | 0.189 | 0.008 | 0.193 | |
| withReplacement | 0.141 | 0.000 | 0.138 | |