Back to Build/check report for BioC 3.17: simplified long |
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This page was generated on 2023-03-01 07:38:46 -0000 (Wed, 01 Mar 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4266 |
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To the developers/maintainers of the nullranges package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/nullranges.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1360/2171 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
nullranges 1.5.15 (landing page) Michael Love
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
Package: nullranges |
Version: 1.5.15 |
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:nullranges.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings nullranges_1.5.15.tar.gz |
StartedAt: 2023-02-28 10:03:47 -0000 (Tue, 28 Feb 2023) |
EndedAt: 2023-02-28 10:13:51 -0000 (Tue, 28 Feb 2023) |
EllapsedTime: 603.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: nullranges.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:nullranges.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings nullranges_1.5.15.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/nullranges.Rcheck’ * using R Under development (unstable) (2023-01-14 r83615) * using platform: aarch64-unknown-linux-gnu (64-bit) * R was compiled by gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 * running under: Ubuntu 22.04.1 LTS * using session charset: UTF-8 * checking for file ‘nullranges/DESCRIPTION’ ... OK * this is package ‘nullranges’ version ‘1.5.15’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘nullranges’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘bootRanges.Rmd’ using ‘UTF-8’... OK ‘matchRanges.Rmd’ using ‘UTF-8’... OK ‘matching_ginteractions.Rmd’ using ‘UTF-8’... OK ‘matching_granges.Rmd’ using ‘UTF-8’... OK ‘matching_pool_set.Rmd’ using ‘UTF-8’... OK ‘nullranges.Rmd’ using ‘UTF-8’... OK NONE * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: OK
nullranges.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL nullranges ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘nullranges’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nullranges)
nullranges.Rcheck/tests/testthat.Rout
R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" Copyright (C) 2023 The R Foundation for Statistical Computing Platform: aarch64-unknown-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(nullranges) > > test_check("nullranges") [ FAIL 0 | WARN 0 | SKIP 0 | PASS 9 ] > > proc.time() user system elapsed 21.721 1.520 25.757
nullranges.Rcheck/nullranges-Ex.timings
name | user | system | elapsed | |
MatchedDataFrame | 2.205 | 0.032 | 2.224 | |
MatchedGInteractions | 0.639 | 0.024 | 0.656 | |
MatchedGRanges | 0.589 | 0.000 | 0.587 | |
bootRanges | 0.420 | 0.008 | 0.428 | |
combnCov | 0.004 | 0.000 | 0.004 | |
covariates | 0.167 | 0.004 | 0.172 | |
focal | 0.206 | 0.000 | 0.206 | |
indices | 0.226 | 0.004 | 0.230 | |
makeExampleMatchedDataSet | 1.192 | 0.000 | 1.192 | |
matchRanges | 2.699 | 0.092 | 2.889 | |
matched | 0.172 | 0.004 | 0.175 | |
matchedClass | 0.201 | 0.004 | 0.205 | |
matchedData | 0.163 | 0.000 | 0.163 | |
method | 0.16 | 0.00 | 0.16 | |
oneRegionSegment | 0.492 | 0.000 | 1.130 | |
overview | 0.202 | 0.000 | 0.365 | |
plotCovariate | 4.773 | 0.079 | 4.976 | |
plotPropensity | 1.739 | 0.080 | 1.811 | |
plotSegment | 2.122 | 0.029 | 2.153 | |
pool | 0.148 | 0.004 | 0.149 | |
reduceSegment | 0.304 | 0.004 | 0.308 | |
segmentDensity | 0.622 | 0.004 | 0.626 | |
unmatched | 0.189 | 0.008 | 0.193 | |
withReplacement | 0.141 | 0.000 | 0.138 | |