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This page was generated on 2023-03-01 07:38:46 -0000 (Wed, 01 Mar 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" 4266
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BUILD results for pareg on kunpeng1


To the developers/maintainers of the pareg package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/pareg.git to
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raw results

Package 1427/2171HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
pareg 1.3.0  (landing page)
Kim Philipp Jablonski
Snapshot Date: 2023-02-27 07:53:22 -0000 (Mon, 27 Feb 2023)
git_url: https://git.bioconductor.org/packages/pareg
git_branch: master
git_last_commit: e7feb98
git_last_commit_date: 2022-11-01 15:26:50 -0000 (Tue, 01 Nov 2022)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    ERROR  skipped

Summary

Package: pareg
Version: 1.3.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data pareg
StartedAt: 2023-02-27 16:21:43 -0000 (Mon, 27 Feb 2023)
EndedAt: 2023-02-27 16:23:23 -0000 (Mon, 27 Feb 2023)
EllapsedTime: 100.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data pareg
###
##############################################################################
##############################################################################


* checking for file ‘pareg/DESCRIPTION’ ... OK
* preparing ‘pareg’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘pareg.Rmd’ using rmarkdown
Quitting from lines 145-150 (pareg.Rmd) 
Error: processing vignette 'pareg.Rmd' failed with diagnostics:
Valid installation of TensorFlow not found.

Python environments searched for 'tensorflow' package:
 /usr/bin/python3.10

Python exception encountered:
 Traceback (most recent call last):
  File "/home/biocbuild/bbs-3.17-bioc/R/library/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook
    return _run_hook(name, _hook)
  File "/home/biocbuild/bbs-3.17-bioc/R/library/reticulate/python/rpytools/loader.py", line 93, in _run_hook
    module = hook()
  File "/home/biocbuild/bbs-3.17-bioc/R/library/reticulate/python/rpytools/loader.py", line 117, in _hook
    return _find_and_load(name, import_)
  File "/usr/local/lib/python3.10/dist-packages/tensorflow/__init__.py", line 37, in <module>
    from tensorflow.python.tools import module_util as _module_util
  File "/home/biocbuild/bbs-3.17-bioc/R/library/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook
    return _run_hook(name, _hook)
  File "/home/biocbuild/bbs-3.17-bioc/R/library/reticulate/python/rpytools/loader.py", line 93, in _run_hook
    module = hook()
  File "/home/biocbuild/bbs-3.17-bioc/R/library/reticulate/python/rpytools/loader.py", line 117, in _hook
    return _find_and_load(name, import_)
  File "/home/biocbuild/bbs-3.17-bioc/R/library/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook
    return _run_hook(name, _hook)
  File "/home/biocbuild/bbs-3.17-bioc/R/library/reticulate/python/rpytools/loader.py", line 93, in _run_hook
    module = hook()
  File "/home/biocbuild/bbs-3.17-bioc/R/library/reticulate/python/rpytools/loader.py", line 117, in _hook
    return _find_and_load(name, import_)
  File "/usr/local/lib/python3.10/dist-packages/tensorflow/python/__init__.py", line 45, in <module>
    from tensorflow.python.feature_column import feature_column_lib as feature_column
  File "/home/biocbuild/bbs-3.17-bioc/R/library/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook
    return _run_hook(name, _hook)
  File "/home/biocbuild/bbs-3.17-bioc/R/library/reticulate/python/rpytools/loader.py", line 93, in _run_hook
    module = hook()
  File "/home/biocbuild/bbs-3.17-bioc/R/library/reticulate/python/rpytools/loader.py", line 117, in _hook
    return _find_and_load(name, import_)
  File "/usr/local/lib/python3.10/dist-packages/tensorflow/python/feature_column/feature_column_lib.py", line 18, in <module>
    from tensorflow.python.feature_column.feature_column import *
  File "/home/biocbuild/bbs-3.17-bioc/R/library/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook
    return _run_hook(name, _hook)
  File "/home/biocbuild/bbs-3.17-bioc/R/library/reticulate/python/rpytools/loader.py", line 93, in _run_hook
    module = hook()
  File "/home/biocbuild/bbs-3.17-bioc/R/library/reticulate/python/rpytools/loader.py", line 117, in _hook
    return _find_and_load(name, import_)
  File "/usr/local/lib/python3.10/dist-packages/tensorflow/python/feature_column/feature_column.py", line 143, in <module>
    from tensorflow.python.layers import base
  File "/home/biocbuild/bbs-3.17-bioc/R/library/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook
    return _run_hook(name, _hook)
  File "/home/biocbuild/bbs-3.17-bioc/R/library/reticulate/python/rpytools/loader.py", line 93, in _run_hook
    module = hook()
  File "/home/biocbuild/bbs-3.17-bioc/R/library/reticulate/python/rpytools/loader.py", line 117, in _hook
    return _find_and_load(name, import_)
  File "/usr/local/lib/python3.10/dist-packages/tensorflow/python/layers/base.py", line 16, in <module>
    from tensorflow.python.keras.legacy_tf_layers import base
  File "/home/biocbuild/bbs-3.17-bioc/R/library/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook
    return _run_hook(name, _hook)
  File "/home/biocbuild/bbs-3.17-bioc/R/library/reticulate/python/rpytools/loader.py", line 93, in _run_hook
    module = hook()
  File "/home/biocbuild/bbs-3.17-bioc/R/library/reticulate/python/rpytools/loader.py", line 117, in _hook
    return _find_and_load(name, import_)
  File "/home/biocbuild/bbs-3.17-bioc/R/library/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook
    return _run_hook(name, _hook)
  File "/home/biocbuild/bbs-3.17-bioc/R/library/reticulate/python/rpytools/loader.py", line 93, in _run_hook
    module = hook()
  File "/home/biocbuild/bbs-3.17-bioc/R/library/reticulate/python/rpytools/loader.py", line 117, in _hook
    return _find_and_load(name, import_)
  File "/usr/local/lib/python3.10/dist-packages/tensorflow/python/keras/__init__.py", line 25, in <module>
    from tensorflow.python.keras import models
  File "/home/biocbuild/bbs-3.17-bioc/R/library/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook
    return _run_hook(name, _hook)
  File "/home/biocbuild/bbs-3.17-bioc/R/library/reticulate/python/rpytools/loader.py", line 93, in _run_hook
    module = hook()
  File "/home/biocbuild/bbs-3.17-bioc/R/library/reticulate/python/rpytools/loader.py", line 117, in _hook
    return _find_and_load(name, import_)
  File "/usr/local/lib/python3.10/dist-packages/tensorflow/python/keras/models.py", line 22, in <module>
    from tensorflow.python.keras.engine import functional
  File "/home/biocbuild/bbs-3.17-bioc/R/library/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook
    return _run_hook(name, _hook)
  File "/home/biocbuild/bbs-3.17-bioc/R/library/reticulate/python/rpytools/loader.py", line 93, in _run_hook
    module = hook()
  File "/home/biocbuild/bbs-3.17-bioc/R/library/reticulate/python/rpytools/loader.py", line 117, in _hook
    return _find_and_load(name, import_)
  File "/usr/local/lib/python3.10/dist-packages/tensorflow/python/keras/engine/functional.py", line 32, in <module>
    from tensorflow.python.keras.engine import training as training_lib
  File "/home/biocbuild/bbs-3.17-bioc/R/library/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook
    return _run_hook(name, _hook)
  File "/home/biocbuild/bbs-3.17-bioc/R/library/reticulate/python/rpytools/loader.py", line 93, in _run_hook
    module = hook()
  File "/home/biocbuild/bbs-3.17-bioc/R/library/reticulate/python/rpytools/loader.py", line 117, in _hook
    return _find_and_load(name, import_)
  File "/usr/local/lib/python3.10/dist-packages/tensorflow/python/keras/engine/training.py", line 54, in <module>
    from tensorflow.python.keras.saving import hdf5_format
  File "/home/biocbuild/bbs-3.17-bioc/R/library/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook
    return _run_hook(name, _hook)
  File "/home/biocbuild/bbs-3.17-bioc/R/library/reticulate/python/rpytools/loader.py", line 93, in _run_hook
    module = hook()
  File "/home/biocbuild/bbs-3.17-bioc/R/library/reticulate/python/rpytools/loader.py", line 117, in _hook
    return _find_and_load(name, import_)
  File "/usr/local/lib/python3.10/dist-packages/tensorflow/python/keras/saving/hdf5_format.py", line 37, in <module>
    import h5py
  File "/home/biocbuild/bbs-3.17-bioc/R/library/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook
    return _run_hook(name, _hook)
  File "/home/biocbuild/bbs-3.17-bioc/R/library/reticulate/python/rpytools/loader.py", line 93, in _run_hook
    module = hook()
  File "/home/biocbuild/bbs-3.17-bioc/R/library/reticulate/python/rpytools/loader.py", line 117, in _hook
    return _find_and_load(name, import_)
  File "/usr/local/lib/python3.10/dist-packages/h5py/__init__.py", line 46, in <module>
    from ._conv import register_converters as _register_converters
  File "/home/biocbuild/bbs-3.17-bioc/R/library/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook
    return _run_hook(name, _hook)
  File "/home/biocbuild/bbs-3.17-bioc/R/library/reticulate/python/rpytools/loader.py", line 93, in _run_hook
    module = hook()
  File "/home/biocbuild/bbs-3.17-bioc/R/library/reticulate/python/rpytools/loader.py", line 117, in _hook
    return _find_and_load(name, import_)
  File "h5py/_conv.pyx", line 1, in init h5py._conv
  File "/home/biocbuild/bbs-3.17-bioc/R/library/reticulate/python/rpytools/loader.py", l
--- failed re-building ‘pareg.Rmd’

--- re-building ‘pathway_similarities.Rmd’ using rmarkdown
--- finished re-building ‘pathway_similarities.Rmd’

SUMMARY: processing the following file failed:
  ‘pareg.Rmd’

Error: Vignette re-building failed.
Execution halted