Back to Build/check report for BioC 3.17: simplified long |
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This page was generated on 2023-03-01 07:38:49 -0000 (Wed, 01 Mar 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4266 |
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To the developers/maintainers of the ribor package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ribor.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1670/2171 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
ribor 1.11.0 (landing page) Michael Geng
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
Package: ribor |
Version: 1.11.0 |
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:ribor.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings ribor_1.11.0.tar.gz |
StartedAt: 2023-02-28 13:04:08 -0000 (Tue, 28 Feb 2023) |
EndedAt: 2023-02-28 13:07:18 -0000 (Tue, 28 Feb 2023) |
EllapsedTime: 190.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ribor.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:ribor.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings ribor_1.11.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/ribor.Rcheck’ * using R Under development (unstable) (2023-01-14 r83615) * using platform: aarch64-unknown-linux-gnu (64-bit) * R was compiled by gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 * running under: Ubuntu 22.04.1 LTS * using session charset: UTF-8 * checking for file ‘ribor/DESCRIPTION’ ... OK * this is package ‘ribor’ version ‘1.11.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .travis.yml These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ribor’ can be installed ... OK * checking installed package size ... NOTE installed size is 5.1Mb sub-directories of 1Mb or more: extdata 4.7Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘ribor.Rmd’ using ‘UTF-8’... OK NONE * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.17-bioc/meat/ribor.Rcheck/00check.log’ for details.
ribor.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL ribor ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘ribor’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ribor)
ribor.Rcheck/tests/testthat.Rout
R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" Copyright (C) 2023 The R Foundation for Statistical Computing Platform: aarch64-unknown-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(ribor) > > test_check("ribor") [ FAIL 0 | WARN 3 | SKIP 0 | PASS 96 ] [ FAIL 0 | WARN 3 | SKIP 0 | PASS 96 ] > > proc.time() user system elapsed 29.740 0.723 30.449
ribor.Rcheck/ribor-Ex.timings
name | user | system | elapsed | |
get_coverage | 0.428 | 0.064 | 0.493 | |
get_experiments | 0.142 | 0.032 | 0.174 | |
get_info | 0.201 | 0.008 | 0.208 | |
get_internal_region_coordinates | 2.429 | 0.032 | 2.536 | |
get_internal_region_lengths | 2.587 | 0.064 | 2.651 | |
get_length_distribution | 0.385 | 0.024 | 0.409 | |
get_metadata | 0.116 | 0.000 | 0.117 | |
get_metagene | 0.699 | 0.024 | 0.723 | |
get_original_region_coordinates | 2.783 | 0.024 | 2.806 | |
get_original_region_lengths | 2.896 | 0.032 | 2.928 | |
get_reference_names | 0.823 | 0.000 | 0.823 | |
get_region_counts | 0.279 | 0.000 | 0.279 | |
get_rnaseq | 0.329 | 0.020 | 0.349 | |
get_tidy_metagene | 0.862 | 0.064 | 0.926 | |
plot_length_distribution | 1.422 | 0.032 | 1.454 | |
plot_metagene | 1.647 | 0.052 | 1.699 | |
plot_region_counts | 1.48 | 0.02 | 1.50 | |
rename_default | 0 | 0 | 0 | |
rename_transcripts | 2.200 | 0.044 | 2.244 | |
ribo-class | 2.134 | 0.028 | 2.162 | |
set_aliases | 1.865 | 0.020 | 1.885 | |