Back to Build/check report for BioC 3.17: simplified long |
|
This page was generated on 2023-03-01 07:38:50 -0000 (Wed, 01 Mar 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4266 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the scTHI package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/scTHI.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1817/2171 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
scTHI 1.11.0 (landing page) Michele Ceccarelli
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
Package: scTHI |
Version: 1.11.0 |
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:scTHI.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings scTHI_1.11.0.tar.gz |
StartedAt: 2023-02-28 14:57:58 -0000 (Tue, 28 Feb 2023) |
EndedAt: 2023-02-28 15:00:50 -0000 (Tue, 28 Feb 2023) |
EllapsedTime: 172.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: scTHI.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:scTHI.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings scTHI_1.11.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/scTHI.Rcheck’ * using R Under development (unstable) (2023-01-14 r83615) * using platform: aarch64-unknown-linux-gnu (64-bit) * R was compiled by gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 * running under: Ubuntu 22.04.1 LTS * using session charset: UTF-8 * checking for file ‘scTHI/DESCRIPTION’ ... OK * this is package ‘scTHI’ version ‘1.11.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘scTHI’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking R/sysdata.rda ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed TME_plot 2.426 0.197 7.399 scTHI_plotCluster 1.380 0.068 6.374 scTHI_plotPairs 1.380 0.032 6.185 scTHI_runTsne 1.305 0.025 6.230 scTHI_score 0.513 0.029 5.383 scTHI_plotResult 0.493 0.034 5.347 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘vignette.Rmd’ using ‘UTF-8’... OK NONE * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: OK
scTHI.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL scTHI ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘scTHI’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (scTHI)
scTHI.Rcheck/scTHI-Ex.timings
name | user | system | elapsed | |
TME_classification | 1.111 | 0.024 | 1.138 | |
TME_plot | 2.426 | 0.197 | 7.399 | |
scTHI_plotCluster | 1.380 | 0.068 | 6.374 | |
scTHI_plotPairs | 1.380 | 0.032 | 6.185 | |
scTHI_plotResult | 0.493 | 0.034 | 5.347 | |
scTHI_runTsne | 1.305 | 0.025 | 6.230 | |
scTHI_score | 0.513 | 0.029 | 5.383 | |