| Back to Build/check report for BioC 3.17: simplified long | 
  | 
This page was generated on 2023-03-01 07:38:53 -0000 (Wed, 01 Mar 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs | 
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4266 | 
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| 
To the developers/maintainers of the twoddpcr package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/twoddpcr.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page.  | 
| Package 2102/2171 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| twoddpcr 1.23.0  (landing page) Anthony Chiu 
  | kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
| Package: twoddpcr | 
| Version: 1.23.0 | 
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:twoddpcr.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings twoddpcr_1.23.0.tar.gz | 
| StartedAt: 2023-02-28 18:12:01 -0000 (Tue, 28 Feb 2023) | 
| EndedAt: 2023-02-28 18:17:54 -0000 (Tue, 28 Feb 2023) | 
| EllapsedTime: 352.5 seconds | 
| RetCode: 0 | 
| Status: OK | 
| CheckDir: twoddpcr.Rcheck | 
| Warnings: 0 | 
##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:twoddpcr.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings twoddpcr_1.23.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/twoddpcr.Rcheck’
* using R Under development (unstable) (2023-01-14 r83615)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* checking for file ‘twoddpcr/DESCRIPTION’ ... OK
* this is package ‘twoddpcr’ version ‘1.23.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘twoddpcr’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
knnClassify  18.755  0.144  18.899
ggplot.well   6.910  0.136   7.046
gridClassify  5.340  0.088   5.429
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘twoddpcr.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
twoddpcr.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL twoddpcr ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘twoddpcr’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (twoddpcr)
twoddpcr.Rcheck/tests/testthat.Rout
R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(twoddpcr)
> 
> test_check("twoddpcr")
[ FAIL 0 | WARN 2 | SKIP 0 | PASS 155 ]
[ FAIL 0 | WARN 2 | SKIP 0 | PASS 155 ]
> 
> proc.time()
   user  system elapsed 
  7.600   0.305   7.891 
twoddpcr.Rcheck/twoddpcr-Ex.timings
| name | user | system | elapsed | |
| amplitudes | 0.376 | 0.032 | 0.409 | |
| basicsSummary | 0.007 | 0.000 | 0.007 | |
| castSummary | 0.020 | 0.004 | 0.025 | |
| classCov | 0.075 | 0.000 | 0.075 | |
| classMeans | 0.078 | 0.008 | 0.085 | |
| classStats | 0.094 | 0.004 | 0.098 | |
| clusterCentres | 0.936 | 0.012 | 0.947 | |
| copiesSummary | 0.008 | 0.000 | 0.007 | |
| ddpcrPlate-class | 0.337 | 0.000 | 0.339 | |
| ddpcrWell-class | 0.028 | 0.000 | 0.029 | |
| ddpcrWell-methods | 0.321 | 0.000 | 0.322 | |
| dropletPlot | 4.609 | 0.075 | 4.686 | |
| exportTable | 0.191 | 0.006 | 0.201 | |
| extractPlateName | 0.001 | 0.000 | 0.000 | |
| extractWellNames | 0.001 | 0.000 | 0.001 | |
| facetPlot | 2.703 | 0.044 | 2.747 | |
| flatPlot | 4.754 | 0.076 | 4.832 | |
| fullCopiesSummary | 0.006 | 0.004 | 0.010 | |
| fullCountsSummary | 0.029 | 0.011 | 0.040 | |
| ggplot.well | 6.910 | 0.136 | 7.046 | |
| gridClassify | 5.340 | 0.088 | 5.429 | |
| heatPlot | 1.983 | 0.036 | 2.019 | |
| kmeansClassify | 1.385 | 0.000 | 1.386 | |
| knnClassify | 18.755 | 0.144 | 18.899 | |
| mahalanobisRain | 1.056 | 0.008 | 1.064 | |
| mutantCopiesSummary | 0.002 | 0.004 | 0.005 | |
| numDroplets | 0.32 | 0.00 | 0.32 | |
| parseClusterCounts | 0.016 | 0.000 | 0.016 | |
| plateClassification | 1.396 | 0.000 | 1.397 | |
| plateClassificationMethod | 0.470 | 0.001 | 0.471 | |
| plateSummary | 2.026 | 0.006 | 2.032 | |
| positiveCounts | 0.031 | 0.000 | 0.030 | |
| readCSVDataFrame | 0.016 | 0.000 | 0.016 | |
| relabelClasses | 0.094 | 0.000 | 0.094 | |
| removeDropletClasses | 0.928 | 0.008 | 0.935 | |
| renormalisePlate | 4.204 | 0.008 | 4.212 | |
| sdRain | 3.319 | 0.040 | 3.359 | |
| setChannelNames | 0.001 | 0.001 | 0.002 | |
| setDropletVolume | 0.000 | 0.001 | 0.001 | |
| sortDataFrame | 0.001 | 0.002 | 0.003 | |
| sortWells | 0.324 | 0.000 | 0.324 | |
| thresholdClassify | 2.106 | 0.020 | 2.126 | |
| wellClassification | 0.023 | 0.000 | 0.022 | |
| wellClassificationMethod | 0.024 | 0.000 | 0.024 | |
| whiteTheme | 1.527 | 0.024 | 1.551 | |
| wildTypeCopiesSummary | 0.005 | 0.000 | 0.006 | |