Back to Build/check report for BioC 3.17: simplified long |
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This page was generated on 2023-03-01 07:38:53 -0000 (Wed, 01 Mar 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4266 |
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To the developers/maintainers of the twoddpcr package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/twoddpcr.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 2102/2171 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
twoddpcr 1.23.0 (landing page) Anthony Chiu
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
Package: twoddpcr |
Version: 1.23.0 |
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:twoddpcr.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings twoddpcr_1.23.0.tar.gz |
StartedAt: 2023-02-28 18:12:01 -0000 (Tue, 28 Feb 2023) |
EndedAt: 2023-02-28 18:17:54 -0000 (Tue, 28 Feb 2023) |
EllapsedTime: 352.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: twoddpcr.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:twoddpcr.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings twoddpcr_1.23.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/twoddpcr.Rcheck’ * using R Under development (unstable) (2023-01-14 r83615) * using platform: aarch64-unknown-linux-gnu (64-bit) * R was compiled by gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 * running under: Ubuntu 22.04.1 LTS * using session charset: UTF-8 * checking for file ‘twoddpcr/DESCRIPTION’ ... OK * this is package ‘twoddpcr’ version ‘1.23.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘twoddpcr’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed knnClassify 18.755 0.144 18.899 ggplot.well 6.910 0.136 7.046 gridClassify 5.340 0.088 5.429 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘twoddpcr.Rmd’ using ‘UTF-8’... OK NONE * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: OK
twoddpcr.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL twoddpcr ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘twoddpcr’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (twoddpcr)
twoddpcr.Rcheck/tests/testthat.Rout
R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" Copyright (C) 2023 The R Foundation for Statistical Computing Platform: aarch64-unknown-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(twoddpcr) > > test_check("twoddpcr") [ FAIL 0 | WARN 2 | SKIP 0 | PASS 155 ] [ FAIL 0 | WARN 2 | SKIP 0 | PASS 155 ] > > proc.time() user system elapsed 7.600 0.305 7.891
twoddpcr.Rcheck/twoddpcr-Ex.timings
name | user | system | elapsed | |
amplitudes | 0.376 | 0.032 | 0.409 | |
basicsSummary | 0.007 | 0.000 | 0.007 | |
castSummary | 0.020 | 0.004 | 0.025 | |
classCov | 0.075 | 0.000 | 0.075 | |
classMeans | 0.078 | 0.008 | 0.085 | |
classStats | 0.094 | 0.004 | 0.098 | |
clusterCentres | 0.936 | 0.012 | 0.947 | |
copiesSummary | 0.008 | 0.000 | 0.007 | |
ddpcrPlate-class | 0.337 | 0.000 | 0.339 | |
ddpcrWell-class | 0.028 | 0.000 | 0.029 | |
ddpcrWell-methods | 0.321 | 0.000 | 0.322 | |
dropletPlot | 4.609 | 0.075 | 4.686 | |
exportTable | 0.191 | 0.006 | 0.201 | |
extractPlateName | 0.001 | 0.000 | 0.000 | |
extractWellNames | 0.001 | 0.000 | 0.001 | |
facetPlot | 2.703 | 0.044 | 2.747 | |
flatPlot | 4.754 | 0.076 | 4.832 | |
fullCopiesSummary | 0.006 | 0.004 | 0.010 | |
fullCountsSummary | 0.029 | 0.011 | 0.040 | |
ggplot.well | 6.910 | 0.136 | 7.046 | |
gridClassify | 5.340 | 0.088 | 5.429 | |
heatPlot | 1.983 | 0.036 | 2.019 | |
kmeansClassify | 1.385 | 0.000 | 1.386 | |
knnClassify | 18.755 | 0.144 | 18.899 | |
mahalanobisRain | 1.056 | 0.008 | 1.064 | |
mutantCopiesSummary | 0.002 | 0.004 | 0.005 | |
numDroplets | 0.32 | 0.00 | 0.32 | |
parseClusterCounts | 0.016 | 0.000 | 0.016 | |
plateClassification | 1.396 | 0.000 | 1.397 | |
plateClassificationMethod | 0.470 | 0.001 | 0.471 | |
plateSummary | 2.026 | 0.006 | 2.032 | |
positiveCounts | 0.031 | 0.000 | 0.030 | |
readCSVDataFrame | 0.016 | 0.000 | 0.016 | |
relabelClasses | 0.094 | 0.000 | 0.094 | |
removeDropletClasses | 0.928 | 0.008 | 0.935 | |
renormalisePlate | 4.204 | 0.008 | 4.212 | |
sdRain | 3.319 | 0.040 | 3.359 | |
setChannelNames | 0.001 | 0.001 | 0.002 | |
setDropletVolume | 0.000 | 0.001 | 0.001 | |
sortDataFrame | 0.001 | 0.002 | 0.003 | |
sortWells | 0.324 | 0.000 | 0.324 | |
thresholdClassify | 2.106 | 0.020 | 2.126 | |
wellClassification | 0.023 | 0.000 | 0.022 | |
wellClassificationMethod | 0.024 | 0.000 | 0.024 | |
whiteTheme | 1.527 | 0.024 | 1.551 | |
wildTypeCopiesSummary | 0.005 | 0.000 | 0.006 | |