Back to Build/check report for BioC 3.17: simplified long |
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This page was generated on 2023-03-01 07:38:53 -0000 (Wed, 01 Mar 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4266 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the velociraptor package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/velociraptor.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 2131/2171 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
velociraptor 1.9.1 (landing page) Kevin Rue-Albrecht
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | ERROR | skipped | |||||||||
Package: velociraptor |
Version: 1.9.1 |
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data velociraptor |
StartedAt: 2023-02-27 19:35:53 -0000 (Mon, 27 Feb 2023) |
EndedAt: 2023-02-27 19:39:07 -0000 (Mon, 27 Feb 2023) |
EllapsedTime: 193.3 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data velociraptor ### ############################################################################## ############################################################################## * checking for file ‘velociraptor/DESCRIPTION’ ... OK * preparing ‘velociraptor’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘velociraptor.Rmd’ using rmarkdown Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /home/biocbuild/.cache/R/basilisk/1.11.2/velociraptor/1.9.1/env added / updated specs: - python=3.8.13 The following NEW packages will be INSTALLED: _openmp_mutex conda-forge/linux-aarch64::_openmp_mutex-4.5-2_gnu ca-certificates conda-forge/linux-aarch64::ca-certificates-2022.12.7-h4fd8a4c_0 ld_impl_linux-aar~ conda-forge/linux-aarch64::ld_impl_linux-aarch64-2.40-h2d8c526_0 libffi conda-forge/linux-aarch64::libffi-3.3-h884eca8_2 libgcc-ng conda-forge/linux-aarch64::libgcc-ng-12.2.0-h607ecd0_19 libgomp conda-forge/linux-aarch64::libgomp-12.2.0-h607ecd0_19 libsqlite conda-forge/linux-aarch64::libsqlite-3.40.0-hf9034f9_0 libstdcxx-ng conda-forge/linux-aarch64::libstdcxx-ng-12.2.0-hc13a102_19 libzlib conda-forge/linux-aarch64::libzlib-1.2.13-h4e544f5_4 ncurses conda-forge/linux-aarch64::ncurses-6.3-headf329_1 openssl conda-forge/linux-aarch64::openssl-1.1.1t-hb4cce97_0 pip conda-forge/noarch::pip-23.0.1-pyhd8ed1ab_0 python pkgs/main/linux-aarch64::python-3.8.13-h6c906d0_1 readline conda-forge/linux-aarch64::readline-8.1.2-h38e3740_0 setuptools conda-forge/noarch::setuptools-67.4.0-pyhd8ed1ab_0 sqlite conda-forge/linux-aarch64::sqlite-3.40.0-h69ca7e5_0 tk conda-forge/linux-aarch64::tk-8.6.12-hd8af866_0 wheel conda-forge/noarch::wheel-0.38.4-pyhd8ed1ab_0 xz conda-forge/linux-aarch64::xz-5.2.6-h9cdd2b7_0 zlib conda-forge/linux-aarch64::zlib-1.2.13-h4e544f5_4 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /home/biocbuild/.cache/R/basilisk/1.11.2/velociraptor/1.9.1/env added / updated specs: - python=3.8.13 The following packages will be UPDATED: ca-certificates conda-forge::ca-certificates-2022.12.~ --> pkgs/main::ca-certificates-2023.01.10-hd43f75c_0 The following packages will be SUPERSEDED by a higher-priority channel: openssl conda-forge::openssl-1.1.1t-hb4cce97_0 --> pkgs/main::openssl-1.1.1t-h2f4d8fa_0 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 4.12.0 latest version: 23.1.0 Please update conda by running $ conda update -n base -c defaults conda Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve. Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve. PackagesNotFoundError: The following packages are not available from current channels: - anndata=0.7.4 - umap-learn=0.4.6 - stdlib-list=0.6.0 Current channels: - https://conda.anaconda.org/bioconda/linux-aarch64 - https://conda.anaconda.org/bioconda/noarch - https://conda.anaconda.org/conda-forge/linux-aarch64 - https://conda.anaconda.org/conda-forge/noarch - https://repo.anaconda.com/pkgs/main/linux-aarch64 - https://repo.anaconda.com/pkgs/main/noarch - https://repo.anaconda.com/pkgs/r/linux-aarch64 - https://repo.anaconda.com/pkgs/r/noarch To search for alternate channels that may provide the conda package you're looking for, navigate to https://anaconda.org and use the search bar at the top of the page. Quitting from lines 70-73 (velociraptor.Rmd) Error: processing vignette 'velociraptor.Rmd' failed with diagnostics: one or more Python packages failed to install [error code 1] --- failed re-building ‘velociraptor.Rmd’ SUMMARY: processing the following file failed: ‘velociraptor.Rmd’ Error: Vignette re-building failed. Execution halted