Back to Build/check report for BioC 3.17:   simplified   long
AB[C]DEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2023-03-27 05:50:30 -0000 (Mon, 27 Mar 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-03-12 r83975) -- "Unsuffered Consequences" 6083
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for CAGEr on kunpeng1


To the developers/maintainers of the CAGEr package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CAGEr.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 256/2195HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CAGEr 2.5.0  (landing page)
Charles Plessy
Snapshot Date: 2023-03-24 01:40:07 -0000 (Fri, 24 Mar 2023)
git_url: https://git.bioconductor.org/packages/CAGEr
git_branch: devel
git_last_commit: 3cc0923
git_last_commit_date: 2022-11-01 15:07:54 -0000 (Tue, 01 Nov 2022)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    ERROR  skipped

Summary

Package: CAGEr
Version: 2.5.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CAGEr
StartedAt: 2023-03-24 06:54:41 -0000 (Fri, 24 Mar 2023)
EndedAt: 2023-03-24 06:56:11 -0000 (Fri, 24 Mar 2023)
EllapsedTime: 89.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CAGEr
###
##############################################################################
##############################################################################


* checking for file ‘CAGEr/DESCRIPTION’ ... OK
* preparing ‘CAGEr’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CAGE_Resources.Rmd’ using rmarkdown
--- finished re-building ‘CAGE_Resources.Rmd’

--- re-building ‘CAGEexp.Rmd’ using rmarkdown
Quitting from lines 214-219 (CAGEexp.Rmd) 
Error: processing vignette 'CAGEexp.Rmd' failed with diagnostics:
invalid class "CAGEexp" object: 'genomeName' must be the name an installed genome package. See 'BSgenome::installed.genomes()' and 'BSgenome::available.genomes()'.
--- failed re-building ‘CAGEexp.Rmd’

SUMMARY: processing the following file failed:
  ‘CAGEexp.Rmd’

Error: Vignette re-building failed.
Execution halted