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This page was generated on 2023-03-27 05:50:31 -0000 (Mon, 27 Mar 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-03-12 r83975) -- "Unsuffered Consequences" 6083
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for CNEr on kunpeng1


To the developers/maintainers of the CNEr package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CNEr.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 372/2195HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CNEr 1.35.0  (landing page)
Ge Tan
Snapshot Date: 2023-03-24 01:40:07 -0000 (Fri, 24 Mar 2023)
git_url: https://git.bioconductor.org/packages/CNEr
git_branch: devel
git_last_commit: 7f627d6
git_last_commit_date: 2022-11-01 15:09:13 -0000 (Tue, 01 Nov 2022)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    ERROR  skipped

Summary

Package: CNEr
Version: 1.35.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CNEr
StartedAt: 2023-03-24 07:45:46 -0000 (Fri, 24 Mar 2023)
EndedAt: 2023-03-24 07:47:09 -0000 (Fri, 24 Mar 2023)
EllapsedTime: 82.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CNEr
###
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* checking for file ‘CNEr/DESCRIPTION’ ... OK
* preparing ‘CNEr’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CNEr.Rmd’ using rmarkdown
Quitting from lines 130-145 (CNEr.Rmd) 
Error: processing vignette 'CNEr.Rmd' failed with diagnostics:
there is no package called 'BSgenome.Ggallus.UCSC.galGal3'
--- failed re-building ‘CNEr.Rmd’

--- re-building ‘PairwiseWholeGenomeAlignment.Rmd’ using rmarkdown
--- finished re-building ‘PairwiseWholeGenomeAlignment.Rmd’

SUMMARY: processing the following file failed:
  ‘CNEr.Rmd’

Error: Vignette re-building failed.
Execution halted