| Back to Build/check report for BioC 3.17: simplified long |
|
This page was generated on 2023-03-27 05:50:31 -0000 (Mon, 27 Mar 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-03-12 r83975) -- "Unsuffered Consequences" | 6083 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the CoGAPS package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CoGAPS.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 390/2195 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| CoGAPS 3.19.1 (landing page) Elana J. Fertig
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | ERROR | skipped | |||||||||
| Package: CoGAPS |
| Version: 3.19.1 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CoGAPS |
| StartedAt: 2023-03-24 07:48:38 -0000 (Fri, 24 Mar 2023) |
| EndedAt: 2023-03-24 07:50:10 -0000 (Fri, 24 Mar 2023) |
| EllapsedTime: 92.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CoGAPS
###
##############################################################################
##############################################################################
* checking for file ‘CoGAPS/DESCRIPTION’ ... OK
* preparing ‘CoGAPS’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CoGAPS.Rmd’ using rmarkdown
Error: processing vignette 'CoGAPS.Rmd' failed with diagnostics:
Duplicate chunk label 'load precomputed from zenodo', which has been used for the chunk:
# OPTION: download precomputed CoGAPS result object from Zenodo
# Bioc vignette uses this
options(timeout=1000) # adjust this if you're getting timeout downloading the file
url = "https://zenodo.org/record/7709664/files/cogapsresult.Rds?download=1"
download.file(url,"cogapsresult_download.Rds")
cogapsresult <- readRDS("cogapsresult_download.Rds")
Error: tangling vignette 'CoGAPS.Rmd' failed with diagnostics:
Duplicate chunk label 'load precomputed from zenodo', which has been used for the chunk:
# OPTION: download precomputed CoGAPS result object from Zenodo
# Bioc vignette uses this
options(timeout=1000) # adjust this if you're getting timeout downloading the file
url = "https://zenodo.org/record/7709664/files/cogapsresult.Rds?download=1"
download.file(url,"cogapsresult_download.Rds")
cogapsresult <- readRDS("cogapsresult_download.Rds")
--- failed re-building ‘CoGAPS.Rmd’
SUMMARY: processing the following files failed:
‘CoGAPS.Rmd’ ‘CoGAPS.Rmd’
Error: Vignette re-building failed.
In addition: Warning message:
In tools::buildVignettes(dir = ".", tangle = TRUE) :
Files named as vignettes but with no recognized vignette engine:
‘vignettes/modsimdebug.Rmd’
(Is a VignetteBuilder field missing?)
Execution halted