| Back to Build/check report for BioC 3.17: simplified long |
|
This page was generated on 2023-03-27 05:50:36 -0000 (Mon, 27 Mar 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-03-12 r83975) -- "Unsuffered Consequences" | 6083 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the HPiP package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 935/2195 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.5.3 (landing page) Matineh Rahmatbakhsh
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
| Package: HPiP |
| Version: 1.5.3 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings HPiP_1.5.3.tar.gz |
| StartedAt: 2023-03-25 04:39:02 -0000 (Sat, 25 Mar 2023) |
| EndedAt: 2023-03-25 04:54:32 -0000 (Sat, 25 Mar 2023) |
| EllapsedTime: 930.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings HPiP_1.5.3.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/HPiP.Rcheck’
* using R Under development (unstable) (2023-03-12 r83975)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.2 LTS
* using session charset: UTF-8
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.5.3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
var_imp 38.989 0.512 39.505
corr_plot 36.911 0.312 37.225
FSmethod 36.662 0.444 37.115
pred_ensembel 17.450 0.400 15.555
getFASTA 0.700 0.020 6.803
enrichfindP 0.417 0.044 15.211
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘HPiP_tutorial.Rmd’ using ‘UTF-8’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.17-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library’ * installing *source* package ‘HPiP’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R Under development (unstable) (2023-03-12 r83975) -- "Unsuffered Consequences"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 109.573164
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 104.067202
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 95.597877
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 96.255857
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 95.511383
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 96.196353
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 99.287522
iter 10 value 88.785627
iter 20 value 81.023222
iter 30 value 80.897609
iter 40 value 80.706461
iter 50 value 80.675119
iter 60 value 80.674593
final value 80.674590
converged
Fitting Repeat 3
# weights: 305
initial value 100.800121
final value 94.008696
converged
Fitting Repeat 4
# weights: 305
initial value 113.139639
final value 94.008697
converged
Fitting Repeat 5
# weights: 305
initial value 109.551337
iter 10 value 91.154342
iter 20 value 88.146803
iter 30 value 88.138961
final value 88.138950
converged
Fitting Repeat 1
# weights: 507
initial value 96.291151
iter 10 value 93.893275
iter 20 value 93.879918
final value 93.879912
converged
Fitting Repeat 2
# weights: 507
initial value 95.771318
final value 94.052910
converged
Fitting Repeat 3
# weights: 507
initial value 102.592401
iter 10 value 91.923825
iter 20 value 90.915928
iter 30 value 90.866769
final value 90.817139
converged
Fitting Repeat 4
# weights: 507
initial value 108.157061
final value 94.008696
converged
Fitting Repeat 5
# weights: 507
initial value 119.178164
final value 93.371808
converged
Fitting Repeat 1
# weights: 103
initial value 106.771660
iter 10 value 94.054843
iter 20 value 91.043061
iter 30 value 85.676274
iter 40 value 85.307552
iter 50 value 84.130098
iter 60 value 84.052564
iter 70 value 83.328022
final value 83.311106
converged
Fitting Repeat 2
# weights: 103
initial value 98.945595
iter 10 value 93.984587
iter 20 value 86.528521
iter 30 value 84.077285
iter 40 value 83.222507
iter 50 value 82.802340
iter 60 value 82.642187
iter 70 value 81.790196
iter 80 value 81.062656
iter 90 value 81.016365
iter 100 value 80.772461
final value 80.772461
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 100.605279
iter 10 value 94.055550
iter 20 value 91.764078
iter 30 value 91.140379
iter 40 value 90.599846
iter 50 value 89.909511
iter 60 value 89.756662
iter 70 value 89.578121
final value 89.573554
converged
Fitting Repeat 4
# weights: 103
initial value 101.751157
iter 10 value 94.386851
iter 20 value 94.059096
iter 30 value 93.270548
iter 40 value 92.495664
iter 50 value 91.491462
iter 60 value 91.278673
iter 70 value 89.802786
iter 80 value 89.784805
final value 89.784803
converged
Fitting Repeat 5
# weights: 103
initial value 99.895187
iter 10 value 94.056732
iter 20 value 87.777219
iter 30 value 85.747236
iter 40 value 85.302499
iter 50 value 82.875482
iter 60 value 82.516499
iter 70 value 81.241499
iter 80 value 80.653394
iter 90 value 80.572913
final value 80.571485
converged
Fitting Repeat 1
# weights: 305
initial value 106.303652
iter 10 value 93.899043
iter 20 value 87.080516
iter 30 value 86.486556
iter 40 value 85.446193
iter 50 value 85.071073
iter 60 value 84.211544
iter 70 value 83.113921
iter 80 value 81.429396
iter 90 value 81.240249
iter 100 value 81.144800
final value 81.144800
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 99.303567
iter 10 value 92.133382
iter 20 value 84.423854
iter 30 value 83.698591
iter 40 value 83.232417
iter 50 value 83.058803
iter 60 value 83.017916
iter 70 value 83.001287
iter 80 value 82.958731
iter 90 value 82.725365
iter 100 value 81.612045
final value 81.612045
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 100.414371
iter 10 value 94.093592
iter 20 value 90.957283
iter 30 value 86.623919
iter 40 value 83.683967
iter 50 value 82.073610
iter 60 value 81.469145
iter 70 value 80.602942
iter 80 value 80.288132
iter 90 value 80.224399
iter 100 value 79.923277
final value 79.923277
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 102.636975
iter 10 value 94.016971
iter 20 value 88.140272
iter 30 value 87.393594
iter 40 value 86.721370
iter 50 value 82.810965
iter 60 value 80.924142
iter 70 value 80.349639
iter 80 value 79.975111
iter 90 value 79.412309
iter 100 value 79.231715
final value 79.231715
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 129.788294
iter 10 value 95.189915
iter 20 value 85.298752
iter 30 value 85.032396
iter 40 value 82.504929
iter 50 value 80.892914
iter 60 value 80.152731
iter 70 value 79.956568
iter 80 value 79.920254
iter 90 value 79.891367
iter 100 value 79.822481
final value 79.822481
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 108.185043
iter 10 value 94.058535
iter 20 value 87.627923
iter 30 value 85.498520
iter 40 value 84.857843
iter 50 value 82.522553
iter 60 value 80.590956
iter 70 value 80.060719
iter 80 value 79.763793
iter 90 value 79.295010
iter 100 value 79.041575
final value 79.041575
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 106.720817
iter 10 value 92.845580
iter 20 value 84.505539
iter 30 value 84.239007
iter 40 value 83.091727
iter 50 value 81.543456
iter 60 value 81.072984
iter 70 value 81.006795
iter 80 value 80.570291
iter 90 value 80.068031
iter 100 value 79.567416
final value 79.567416
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 103.538092
iter 10 value 93.504158
iter 20 value 86.158730
iter 30 value 83.886886
iter 40 value 82.992089
iter 50 value 82.804335
iter 60 value 82.547852
iter 70 value 81.816040
iter 80 value 80.482985
iter 90 value 79.745300
iter 100 value 79.414090
final value 79.414090
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 113.939831
iter 10 value 94.084255
iter 20 value 91.768503
iter 30 value 87.374149
iter 40 value 83.497121
iter 50 value 81.778432
iter 60 value 80.635744
iter 70 value 80.192574
iter 80 value 79.495091
iter 90 value 79.100900
iter 100 value 78.944421
final value 78.944421
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 111.527938
iter 10 value 94.829365
iter 20 value 91.443829
iter 30 value 86.358179
iter 40 value 82.633461
iter 50 value 81.373884
iter 60 value 80.749224
iter 70 value 80.258737
iter 80 value 80.097016
iter 90 value 79.777170
iter 100 value 79.431544
final value 79.431544
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 96.444283
final value 93.373581
converged
Fitting Repeat 2
# weights: 103
initial value 95.293837
iter 10 value 93.917389
iter 20 value 93.916655
iter 30 value 93.913309
final value 93.904169
converged
Fitting Repeat 3
# weights: 103
initial value 95.018988
iter 10 value 94.010969
iter 20 value 94.010054
iter 30 value 94.008842
iter 40 value 92.267265
iter 50 value 84.816251
iter 60 value 84.786065
iter 70 value 83.816958
iter 80 value 83.436952
iter 90 value 83.434876
iter 100 value 83.434324
final value 83.434324
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 94.571613
final value 94.054619
converged
Fitting Repeat 5
# weights: 103
initial value 100.749801
iter 10 value 94.010137
iter 20 value 93.182481
iter 30 value 83.980998
iter 40 value 83.979556
iter 40 value 83.979556
iter 40 value 83.979556
final value 83.979556
converged
Fitting Repeat 1
# weights: 305
initial value 104.377381
iter 10 value 92.065169
iter 20 value 89.846084
iter 30 value 89.838419
iter 40 value 89.837332
iter 50 value 89.326491
iter 60 value 89.325390
iter 70 value 89.236497
iter 80 value 88.915652
iter 90 value 88.771879
final value 88.771860
converged
Fitting Repeat 2
# weights: 305
initial value 98.461025
iter 10 value 93.903724
iter 20 value 92.347605
iter 30 value 83.665782
iter 40 value 82.786307
iter 50 value 82.700605
iter 60 value 82.700356
iter 60 value 82.700355
iter 60 value 82.700355
final value 82.700355
converged
Fitting Repeat 3
# weights: 305
initial value 104.548311
iter 10 value 94.056737
iter 20 value 94.031884
iter 30 value 92.377884
iter 40 value 92.102556
iter 50 value 89.021400
iter 60 value 82.795656
iter 70 value 82.272071
iter 80 value 82.228447
iter 90 value 82.208290
final value 82.208229
converged
Fitting Repeat 4
# weights: 305
initial value 104.073860
iter 10 value 94.057841
iter 20 value 93.998655
iter 30 value 89.930924
iter 40 value 89.925003
iter 50 value 89.168143
iter 60 value 89.006416
iter 70 value 88.895803
iter 80 value 88.894411
iter 90 value 87.413834
iter 100 value 86.991447
final value 86.991447
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 99.142088
iter 10 value 94.056295
iter 20 value 93.960212
iter 30 value 90.445062
iter 40 value 90.443008
iter 50 value 90.179640
iter 60 value 82.593937
iter 70 value 82.184739
iter 80 value 82.050153
iter 90 value 81.709887
iter 100 value 80.644525
final value 80.644525
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 97.108124
iter 10 value 93.747337
iter 20 value 93.740474
iter 30 value 93.374578
iter 40 value 93.178262
iter 50 value 85.111196
iter 60 value 84.701276
iter 70 value 84.695958
final value 84.695926
converged
Fitting Repeat 2
# weights: 507
initial value 99.685049
iter 10 value 94.065213
iter 20 value 94.032293
iter 30 value 83.617902
iter 40 value 83.579943
iter 50 value 83.406231
iter 60 value 80.161538
iter 70 value 80.129073
final value 80.128628
converged
Fitting Repeat 3
# weights: 507
initial value 97.238386
iter 10 value 94.019590
iter 20 value 94.006599
iter 30 value 87.413777
iter 40 value 83.746623
iter 50 value 83.135482
iter 60 value 82.741888
iter 70 value 82.730491
iter 80 value 82.590414
iter 90 value 82.587798
iter 100 value 82.502069
final value 82.502069
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 105.986570
iter 10 value 93.954224
iter 20 value 93.953479
iter 30 value 93.952587
iter 40 value 93.902176
iter 50 value 93.899346
final value 93.899343
converged
Fitting Repeat 5
# weights: 507
initial value 101.752949
iter 10 value 94.060944
iter 20 value 90.949666
iter 30 value 83.542143
iter 40 value 83.243862
iter 50 value 82.678953
iter 60 value 82.084795
iter 70 value 81.523979
iter 80 value 79.716600
iter 90 value 78.728049
iter 100 value 78.487891
final value 78.487891
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 96.743298
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 103.223977
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 98.212662
final value 94.443243
converged
Fitting Repeat 4
# weights: 103
initial value 107.318648
final value 94.275363
converged
Fitting Repeat 5
# weights: 103
initial value 95.075290
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 96.866796
iter 10 value 94.275363
final value 94.275362
converged
Fitting Repeat 2
# weights: 305
initial value 94.917579
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 108.228276
iter 10 value 92.342820
iter 20 value 91.741545
iter 30 value 91.739775
final value 91.739683
converged
Fitting Repeat 4
# weights: 305
initial value 120.847937
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 97.839691
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 113.615373
iter 10 value 94.211080
iter 20 value 94.018076
iter 30 value 93.531234
final value 93.530034
converged
Fitting Repeat 2
# weights: 507
initial value 100.639911
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 117.633882
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 98.766178
iter 10 value 94.175556
iter 20 value 94.092000
iter 30 value 94.060707
iter 40 value 92.534535
iter 50 value 92.534158
iter 60 value 92.443744
iter 70 value 92.439375
final value 92.439365
converged
Fitting Repeat 5
# weights: 507
initial value 112.970825
final value 94.275362
converged
Fitting Repeat 1
# weights: 103
initial value 101.277337
iter 10 value 94.483396
iter 20 value 93.315827
iter 30 value 86.102823
iter 40 value 84.258252
iter 50 value 83.735669
iter 60 value 83.230487
iter 70 value 82.771420
iter 80 value 82.667058
final value 82.667052
converged
Fitting Repeat 2
# weights: 103
initial value 108.642744
iter 10 value 94.362190
iter 20 value 93.395768
iter 30 value 87.442577
iter 40 value 86.820565
iter 50 value 83.326738
iter 60 value 82.621885
iter 70 value 82.584191
final value 82.584180
converged
Fitting Repeat 3
# weights: 103
initial value 102.007869
iter 10 value 94.486453
iter 20 value 94.297049
iter 30 value 94.280190
iter 40 value 92.155294
iter 50 value 88.907822
iter 60 value 87.372029
iter 70 value 85.916077
iter 80 value 85.721843
iter 90 value 85.510301
iter 100 value 85.498879
final value 85.498879
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 96.685862
iter 10 value 94.486354
iter 20 value 89.846636
iter 30 value 86.655791
iter 40 value 86.422919
iter 50 value 86.354138
final value 86.354126
converged
Fitting Repeat 5
# weights: 103
initial value 115.055728
iter 10 value 94.204282
iter 20 value 87.542887
iter 30 value 86.714990
iter 40 value 86.117020
iter 50 value 85.606490
iter 60 value 85.596656
iter 70 value 85.515152
iter 80 value 85.499017
final value 85.498873
converged
Fitting Repeat 1
# weights: 305
initial value 100.168822
iter 10 value 93.847833
iter 20 value 93.159310
iter 30 value 90.518225
iter 40 value 88.257001
iter 50 value 85.730594
iter 60 value 84.436779
iter 70 value 83.146437
iter 80 value 82.581472
iter 90 value 81.780769
iter 100 value 81.662977
final value 81.662977
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 104.369625
iter 10 value 94.417248
iter 20 value 90.194263
iter 30 value 89.494090
iter 40 value 88.969948
iter 50 value 88.174258
iter 60 value 86.731959
iter 70 value 82.727170
iter 80 value 82.153033
iter 90 value 81.709810
iter 100 value 81.339439
final value 81.339439
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 101.268260
iter 10 value 93.851348
iter 20 value 90.054243
iter 30 value 85.094435
iter 40 value 84.187155
iter 50 value 83.959099
iter 60 value 83.488396
iter 70 value 83.129812
iter 80 value 81.988851
iter 90 value 81.692036
iter 100 value 81.677101
final value 81.677101
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 108.628878
iter 10 value 96.297150
iter 20 value 89.275875
iter 30 value 86.933163
iter 40 value 85.002809
iter 50 value 84.372740
iter 60 value 83.491586
iter 70 value 82.862698
iter 80 value 81.642613
iter 90 value 81.230156
iter 100 value 81.180643
final value 81.180643
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 116.185453
iter 10 value 94.490157
iter 20 value 94.288214
iter 30 value 88.985815
iter 40 value 87.739699
iter 50 value 85.082491
iter 60 value 84.550855
iter 70 value 83.998812
iter 80 value 83.367287
iter 90 value 82.661025
iter 100 value 81.363966
final value 81.363966
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 119.820330
iter 10 value 94.542391
iter 20 value 94.493520
iter 30 value 93.013781
iter 40 value 86.424213
iter 50 value 84.038817
iter 60 value 83.253103
iter 70 value 82.071077
iter 80 value 81.728784
iter 90 value 81.475519
iter 100 value 81.267726
final value 81.267726
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 103.131931
iter 10 value 99.431360
iter 20 value 93.562931
iter 30 value 93.089188
iter 40 value 91.967398
iter 50 value 90.217659
iter 60 value 86.216390
iter 70 value 85.372292
iter 80 value 84.175045
iter 90 value 83.722116
iter 100 value 82.536301
final value 82.536301
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 121.862317
iter 10 value 94.647769
iter 20 value 91.834230
iter 30 value 89.248136
iter 40 value 87.405355
iter 50 value 86.463051
iter 60 value 85.719154
iter 70 value 83.474966
iter 80 value 82.793622
iter 90 value 82.522709
iter 100 value 82.236860
final value 82.236860
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 111.118874
iter 10 value 94.588900
iter 20 value 88.273415
iter 30 value 85.334538
iter 40 value 83.686411
iter 50 value 82.842829
iter 60 value 81.701630
iter 70 value 81.449810
iter 80 value 81.315035
iter 90 value 81.265215
iter 100 value 81.242359
final value 81.242359
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 124.355157
iter 10 value 94.485955
iter 20 value 93.899662
iter 30 value 89.961392
iter 40 value 87.728051
iter 50 value 84.829304
iter 60 value 82.174062
iter 70 value 80.976345
iter 80 value 80.644239
iter 90 value 80.600442
iter 100 value 80.564122
final value 80.564122
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 108.773583
final value 94.485953
converged
Fitting Repeat 2
# weights: 103
initial value 99.759336
iter 10 value 94.486045
iter 20 value 94.480178
iter 30 value 93.376271
iter 40 value 88.645469
iter 50 value 83.439443
iter 60 value 83.064374
iter 70 value 83.063516
final value 83.063461
converged
Fitting Repeat 3
# weights: 103
initial value 103.238192
iter 10 value 94.485838
iter 20 value 94.484206
iter 30 value 94.253979
iter 40 value 94.241020
final value 94.229026
converged
Fitting Repeat 4
# weights: 103
initial value 96.337086
final value 94.485835
converged
Fitting Repeat 5
# weights: 103
initial value 106.820712
final value 94.485911
converged
Fitting Repeat 1
# weights: 305
initial value 120.177178
iter 10 value 94.488313
iter 20 value 94.315316
iter 30 value 88.136656
iter 40 value 87.205543
iter 50 value 86.248188
final value 86.248186
converged
Fitting Repeat 2
# weights: 305
initial value 112.560303
iter 10 value 94.489188
iter 20 value 94.484219
iter 30 value 93.990331
iter 40 value 86.838720
iter 50 value 84.868774
iter 60 value 81.732401
iter 70 value 80.566643
iter 80 value 79.972353
iter 90 value 79.686409
iter 100 value 79.377655
final value 79.377655
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 108.674049
iter 10 value 94.490152
iter 20 value 88.068170
iter 30 value 87.954990
final value 87.954983
converged
Fitting Repeat 4
# weights: 305
initial value 106.111274
iter 10 value 94.489340
iter 20 value 92.785278
iter 30 value 86.169674
iter 40 value 86.039532
iter 50 value 85.968794
final value 85.968184
converged
Fitting Repeat 5
# weights: 305
initial value 104.984425
iter 10 value 94.297150
iter 20 value 92.045322
iter 30 value 91.882478
iter 40 value 91.881995
iter 50 value 91.880351
iter 60 value 91.878688
iter 70 value 91.737734
final value 91.737437
converged
Fitting Repeat 1
# weights: 507
initial value 105.638828
iter 10 value 94.552547
iter 20 value 91.790420
iter 30 value 91.586428
iter 40 value 91.521943
iter 50 value 89.866820
iter 60 value 87.848845
iter 70 value 87.738964
iter 80 value 87.570910
iter 90 value 86.158034
iter 100 value 86.144863
final value 86.144863
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 121.704288
iter 10 value 94.331309
iter 20 value 93.732443
iter 30 value 86.853078
iter 40 value 85.761204
iter 50 value 85.753554
iter 60 value 85.741574
iter 70 value 85.530158
final value 85.529472
converged
Fitting Repeat 3
# weights: 507
initial value 98.201073
iter 10 value 93.799443
iter 20 value 89.718590
iter 30 value 84.574741
iter 40 value 83.739285
iter 50 value 83.728259
iter 60 value 83.727648
iter 70 value 83.727142
iter 80 value 83.725000
iter 90 value 83.721663
final value 83.721175
converged
Fitting Repeat 4
# weights: 507
initial value 124.801260
iter 10 value 94.492804
iter 20 value 94.459952
iter 30 value 93.833855
iter 40 value 88.267297
iter 50 value 88.258612
iter 60 value 88.257506
iter 70 value 88.256390
iter 80 value 88.256031
iter 90 value 85.972801
iter 100 value 84.775779
final value 84.775779
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 114.264390
iter 10 value 94.283869
iter 20 value 94.017002
iter 30 value 92.768738
iter 40 value 88.799174
iter 50 value 88.272650
iter 60 value 88.267747
iter 70 value 88.204898
iter 80 value 88.165825
iter 90 value 88.162844
iter 100 value 88.162166
final value 88.162166
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 98.610139
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 118.420698
final value 93.991525
converged
Fitting Repeat 3
# weights: 103
initial value 103.737440
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 98.904540
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 102.171434
final value 93.836066
converged
Fitting Repeat 1
# weights: 305
initial value 110.735684
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 96.173072
iter 10 value 93.153848
final value 93.153846
converged
Fitting Repeat 3
# weights: 305
initial value 94.512754
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 108.860440
final value 93.481481
converged
Fitting Repeat 5
# weights: 305
initial value 107.692471
iter 10 value 93.978619
final value 93.978617
converged
Fitting Repeat 1
# weights: 507
initial value 102.363563
final value 93.836066
converged
Fitting Repeat 2
# weights: 507
initial value 132.368876
iter 10 value 92.285922
iter 10 value 92.285922
iter 10 value 92.285922
final value 92.285922
converged
Fitting Repeat 3
# weights: 507
initial value 108.413981
iter 10 value 93.038627
final value 92.966991
converged
Fitting Repeat 4
# weights: 507
initial value 122.730963
final value 94.052910
converged
Fitting Repeat 5
# weights: 507
initial value 99.074977
final value 94.052911
converged
Fitting Repeat 1
# weights: 103
initial value 105.690474
iter 10 value 93.482153
iter 20 value 85.958639
iter 30 value 84.039501
iter 40 value 83.394101
iter 50 value 83.308520
iter 60 value 83.142278
iter 70 value 83.093220
final value 83.093137
converged
Fitting Repeat 2
# weights: 103
initial value 98.108776
iter 10 value 94.055015
iter 20 value 93.336887
iter 30 value 93.248671
iter 40 value 93.220553
iter 50 value 91.493997
iter 60 value 83.903089
iter 70 value 81.850434
iter 80 value 81.409748
iter 90 value 81.170202
iter 100 value 80.927918
final value 80.927918
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 100.285941
iter 10 value 93.917479
iter 20 value 88.714957
iter 30 value 86.633059
iter 40 value 85.935877
iter 50 value 85.612757
iter 60 value 84.438661
iter 70 value 82.001067
iter 80 value 81.807905
iter 90 value 81.383273
iter 100 value 81.300279
final value 81.300279
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 105.396722
iter 10 value 94.006953
iter 20 value 93.729678
iter 30 value 84.910710
iter 40 value 84.492063
iter 50 value 84.122965
iter 60 value 83.306978
iter 70 value 82.867379
iter 80 value 81.600273
iter 90 value 81.006081
iter 100 value 80.964423
final value 80.964423
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 108.372194
iter 10 value 94.079149
iter 20 value 92.289700
iter 30 value 86.208056
iter 40 value 85.276683
iter 50 value 84.844037
iter 60 value 83.513577
iter 70 value 83.128402
iter 80 value 83.128171
final value 83.127179
converged
Fitting Repeat 1
# weights: 305
initial value 103.489594
iter 10 value 94.168415
iter 20 value 86.130010
iter 30 value 84.173071
iter 40 value 83.819443
iter 50 value 83.442105
iter 60 value 83.290355
iter 70 value 83.186813
iter 80 value 82.628156
iter 90 value 81.750655
iter 100 value 80.843142
final value 80.843142
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 99.503130
iter 10 value 93.249427
iter 20 value 89.627062
iter 30 value 84.378349
iter 40 value 83.796625
iter 50 value 83.199638
iter 60 value 82.909380
iter 70 value 81.803626
iter 80 value 80.921663
iter 90 value 80.306337
iter 100 value 80.203013
final value 80.203013
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 102.790886
iter 10 value 94.230626
iter 20 value 92.012684
iter 30 value 90.737041
iter 40 value 84.949835
iter 50 value 82.601732
iter 60 value 81.144303
iter 70 value 80.269194
iter 80 value 79.940382
iter 90 value 79.836580
iter 100 value 79.783559
final value 79.783559
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 100.517286
iter 10 value 93.978354
iter 20 value 93.199113
iter 30 value 92.652613
iter 40 value 85.579231
iter 50 value 83.908252
iter 60 value 82.523755
iter 70 value 81.444057
iter 80 value 80.544996
iter 90 value 79.970301
iter 100 value 79.729054
final value 79.729054
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 106.833205
iter 10 value 93.892622
iter 20 value 88.112638
iter 30 value 87.182942
iter 40 value 86.188020
iter 50 value 85.371208
iter 60 value 84.527706
iter 70 value 82.957808
iter 80 value 81.740350
iter 90 value 80.808110
iter 100 value 80.369941
final value 80.369941
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 131.316913
iter 10 value 95.155647
iter 20 value 92.837857
iter 30 value 83.871078
iter 40 value 81.568962
iter 50 value 80.577352
iter 60 value 79.905627
iter 70 value 79.733643
iter 80 value 79.549818
iter 90 value 79.415089
iter 100 value 79.371322
final value 79.371322
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 106.735382
iter 10 value 93.963996
iter 20 value 93.486542
iter 30 value 86.623099
iter 40 value 83.939614
iter 50 value 83.138132
iter 60 value 82.915951
iter 70 value 82.850085
iter 80 value 82.788958
iter 90 value 82.467648
iter 100 value 81.909343
final value 81.909343
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 102.416499
iter 10 value 91.927670
iter 20 value 84.966601
iter 30 value 83.674474
iter 40 value 82.973655
iter 50 value 82.805146
iter 60 value 82.750052
iter 70 value 82.587671
iter 80 value 82.286247
iter 90 value 80.912553
iter 100 value 80.056137
final value 80.056137
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 113.890130
iter 10 value 86.238993
iter 20 value 83.825044
iter 30 value 83.603249
iter 40 value 83.029337
iter 50 value 81.870347
iter 60 value 80.547988
iter 70 value 80.046432
iter 80 value 79.895646
iter 90 value 79.707512
iter 100 value 79.624251
final value 79.624251
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 128.841976
iter 10 value 94.106477
iter 20 value 93.346601
iter 30 value 85.625848
iter 40 value 85.325142
iter 50 value 84.173519
iter 60 value 83.448865
iter 70 value 82.655494
iter 80 value 80.971038
iter 90 value 80.397774
iter 100 value 79.972997
final value 79.972997
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 102.254620
final value 94.054410
converged
Fitting Repeat 2
# weights: 103
initial value 101.759330
final value 94.054672
converged
Fitting Repeat 3
# weights: 103
initial value 103.358799
final value 93.837558
converged
Fitting Repeat 4
# weights: 103
initial value 95.953785
final value 94.054837
converged
Fitting Repeat 5
# weights: 103
initial value 104.468174
final value 94.054536
converged
Fitting Repeat 1
# weights: 305
initial value 95.957846
iter 10 value 94.054242
final value 94.052933
converged
Fitting Repeat 2
# weights: 305
initial value 101.224841
iter 10 value 94.057768
iter 20 value 94.027497
iter 30 value 85.583877
iter 40 value 82.786417
iter 50 value 82.602893
iter 60 value 81.866681
iter 70 value 81.415249
iter 80 value 80.775682
iter 90 value 79.518837
iter 100 value 78.949446
final value 78.949446
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 103.773561
iter 10 value 94.058905
iter 20 value 93.782585
iter 30 value 89.543084
iter 40 value 89.056454
iter 50 value 88.922594
iter 60 value 86.988290
iter 70 value 82.153114
iter 80 value 80.283600
iter 90 value 79.922533
iter 100 value 79.911593
final value 79.911593
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 124.069597
iter 10 value 94.057809
iter 20 value 94.053027
final value 94.053015
converged
Fitting Repeat 5
# weights: 305
initial value 97.408966
iter 10 value 93.159657
iter 20 value 93.156854
iter 30 value 93.155823
iter 40 value 93.010944
iter 50 value 84.574872
iter 60 value 82.411221
iter 70 value 82.401256
iter 80 value 81.941668
iter 90 value 81.410269
iter 100 value 80.662783
final value 80.662783
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 97.703741
iter 10 value 94.059417
iter 20 value 91.984025
iter 30 value 84.504427
iter 40 value 84.245972
iter 50 value 84.216246
final value 84.216166
converged
Fitting Repeat 2
# weights: 507
initial value 99.041097
iter 10 value 94.061174
iter 20 value 93.742355
iter 30 value 84.091972
iter 40 value 83.234859
iter 50 value 82.750009
iter 60 value 82.701665
iter 70 value 82.681436
iter 80 value 82.650755
iter 90 value 82.638024
iter 100 value 82.558054
final value 82.558054
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 99.613791
iter 10 value 94.060063
iter 20 value 93.950569
iter 30 value 93.327209
final value 93.327197
converged
Fitting Repeat 4
# weights: 507
initial value 104.357675
iter 10 value 93.999727
iter 20 value 93.992864
iter 30 value 93.435398
iter 40 value 84.409953
iter 50 value 84.392561
final value 84.392213
converged
Fitting Repeat 5
# weights: 507
initial value 113.559035
iter 10 value 93.999401
iter 20 value 93.332818
iter 30 value 93.328929
iter 40 value 89.117968
iter 50 value 82.881361
iter 60 value 82.629897
iter 60 value 82.629896
final value 82.629896
converged
Fitting Repeat 1
# weights: 103
initial value 103.627930
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 97.023279
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 104.378545
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 98.984180
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 97.372415
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 97.215828
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 97.752226
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 96.858817
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 94.768199
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 110.553826
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 119.860156
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 104.080318
final value 94.466667
converged
Fitting Repeat 3
# weights: 507
initial value 128.545344
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 108.572816
final value 94.466823
converged
Fitting Repeat 5
# weights: 507
initial value 111.806737
final value 94.466823
converged
Fitting Repeat 1
# weights: 103
initial value 106.165667
iter 10 value 94.462328
iter 20 value 91.937564
iter 30 value 84.873055
iter 40 value 84.306254
iter 50 value 84.070847
iter 60 value 83.187658
iter 70 value 82.784962
iter 80 value 82.583381
final value 82.583049
converged
Fitting Repeat 2
# weights: 103
initial value 108.901484
iter 10 value 94.288164
iter 20 value 90.411850
iter 30 value 89.347344
iter 40 value 86.874984
iter 50 value 86.783414
iter 60 value 85.047532
iter 70 value 83.904119
iter 80 value 83.701897
iter 90 value 83.670386
iter 100 value 83.656241
final value 83.656241
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 100.761666
iter 10 value 94.488832
iter 20 value 90.333060
iter 30 value 84.879649
iter 40 value 84.623536
iter 50 value 84.493536
iter 60 value 84.457866
final value 84.457859
converged
Fitting Repeat 4
# weights: 103
initial value 104.112651
iter 10 value 94.487073
iter 20 value 88.176492
iter 30 value 85.009338
iter 40 value 84.744452
iter 50 value 83.962265
iter 60 value 83.901034
iter 70 value 83.899889
iter 80 value 83.709640
iter 90 value 83.658499
iter 100 value 83.654905
final value 83.654905
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 99.520133
iter 10 value 93.037746
iter 20 value 85.121669
iter 30 value 84.821960
iter 40 value 84.560683
iter 50 value 84.497898
iter 60 value 84.462214
iter 70 value 84.457860
final value 84.457858
converged
Fitting Repeat 1
# weights: 305
initial value 101.653165
iter 10 value 94.555587
iter 20 value 94.309449
iter 30 value 88.808116
iter 40 value 86.699207
iter 50 value 83.202827
iter 60 value 81.960281
iter 70 value 81.580663
iter 80 value 81.438166
iter 90 value 81.287198
iter 100 value 81.114706
final value 81.114706
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 116.729983
iter 10 value 94.423255
iter 20 value 87.178423
iter 30 value 84.904463
iter 40 value 84.491774
iter 50 value 83.596256
iter 60 value 83.430488
iter 70 value 83.392529
iter 80 value 83.372839
iter 90 value 83.272666
iter 100 value 82.766814
final value 82.766814
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 104.844137
iter 10 value 94.439396
iter 20 value 87.091097
iter 30 value 84.692573
iter 40 value 83.876514
iter 50 value 83.411774
iter 60 value 82.816590
iter 70 value 82.297783
iter 80 value 81.693018
iter 90 value 81.572004
iter 100 value 81.152311
final value 81.152311
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 103.416871
iter 10 value 94.377588
iter 20 value 91.272655
iter 30 value 87.178414
iter 40 value 85.977243
iter 50 value 85.879234
iter 60 value 84.688236
iter 70 value 82.756302
iter 80 value 82.083131
iter 90 value 81.645013
iter 100 value 81.447174
final value 81.447174
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 102.006985
iter 10 value 94.528035
iter 20 value 94.441173
iter 30 value 92.155428
iter 40 value 88.237384
iter 50 value 86.555330
iter 60 value 84.568101
iter 70 value 83.526402
iter 80 value 83.329346
iter 90 value 83.293360
iter 100 value 83.281142
final value 83.281142
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 112.361070
iter 10 value 94.076301
iter 20 value 88.736680
iter 30 value 86.792955
iter 40 value 86.115779
iter 50 value 84.438975
iter 60 value 83.973147
iter 70 value 82.703558
iter 80 value 81.284073
iter 90 value 80.834465
iter 100 value 80.556163
final value 80.556163
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 107.981124
iter 10 value 93.196651
iter 20 value 87.668905
iter 30 value 87.033481
iter 40 value 85.190055
iter 50 value 84.207738
iter 60 value 83.461880
iter 70 value 82.638899
iter 80 value 82.131106
iter 90 value 81.772696
iter 100 value 81.400401
final value 81.400401
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 134.882307
iter 10 value 95.236297
iter 20 value 93.939215
iter 30 value 87.368535
iter 40 value 84.723580
iter 50 value 84.627003
iter 60 value 84.343461
iter 70 value 83.500049
iter 80 value 83.231824
iter 90 value 82.867465
iter 100 value 82.128418
final value 82.128418
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 112.089385
iter 10 value 93.489673
iter 20 value 88.211902
iter 30 value 86.565212
iter 40 value 85.865856
iter 50 value 84.484734
iter 60 value 83.217204
iter 70 value 82.021317
iter 80 value 81.146728
iter 90 value 80.954634
iter 100 value 80.914384
final value 80.914384
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 131.013875
iter 10 value 94.374747
iter 20 value 89.666374
iter 30 value 85.072882
iter 40 value 84.091647
iter 50 value 83.619212
iter 60 value 83.546286
iter 70 value 83.385742
iter 80 value 83.315714
iter 90 value 83.297362
iter 100 value 83.286339
final value 83.286339
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 96.284090
final value 94.486218
converged
Fitting Repeat 2
# weights: 103
initial value 102.494733
final value 94.485709
converged
Fitting Repeat 3
# weights: 103
initial value 105.527320
iter 10 value 94.486397
iter 20 value 94.484902
iter 20 value 94.484902
iter 20 value 94.484902
final value 94.484902
converged
Fitting Repeat 4
# weights: 103
initial value 101.495799
iter 10 value 94.485984
iter 20 value 94.448929
iter 30 value 93.547249
iter 40 value 93.411069
final value 93.410436
converged
Fitting Repeat 5
# weights: 103
initial value 94.643251
final value 94.468643
converged
Fitting Repeat 1
# weights: 305
initial value 94.999156
iter 10 value 94.489017
iter 20 value 94.436494
iter 30 value 86.327107
iter 40 value 86.298701
iter 50 value 86.258124
iter 60 value 85.153512
iter 70 value 85.093388
final value 85.093347
converged
Fitting Repeat 2
# weights: 305
initial value 100.058106
iter 10 value 94.488976
iter 20 value 92.774610
iter 30 value 83.729000
final value 83.679111
converged
Fitting Repeat 3
# weights: 305
initial value 99.059942
iter 10 value 94.489101
iter 20 value 94.402588
iter 30 value 87.126920
iter 40 value 83.307936
iter 50 value 81.961786
iter 60 value 81.938979
iter 70 value 81.938332
iter 80 value 81.936648
iter 90 value 81.735543
iter 100 value 81.582168
final value 81.582168
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 95.433292
iter 10 value 89.993491
iter 20 value 89.213020
iter 30 value 88.781120
iter 40 value 88.774161
iter 50 value 87.814802
iter 60 value 87.806921
iter 70 value 87.792828
iter 80 value 87.627092
iter 90 value 87.583334
iter 100 value 87.470619
final value 87.470619
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 102.959293
iter 10 value 94.490047
iter 20 value 94.484337
iter 30 value 85.816849
iter 40 value 83.679353
iter 50 value 83.650286
iter 60 value 82.738893
iter 70 value 82.490604
iter 80 value 81.959060
iter 90 value 81.563385
iter 100 value 81.034074
final value 81.034074
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 97.088647
iter 10 value 94.491066
iter 20 value 94.291646
iter 30 value 86.561179
iter 40 value 86.321400
iter 50 value 84.761977
iter 60 value 83.415680
iter 70 value 81.443576
iter 80 value 79.640094
iter 90 value 79.388910
iter 100 value 78.830863
final value 78.830863
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 106.468626
iter 10 value 94.485416
iter 20 value 94.475413
iter 30 value 94.472379
iter 40 value 94.467047
iter 50 value 94.376338
iter 60 value 91.839330
iter 70 value 91.313111
iter 80 value 91.105703
iter 90 value 91.102777
iter 100 value 86.924399
final value 86.924399
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 100.955242
iter 10 value 94.474484
iter 20 value 94.381558
iter 30 value 86.587419
iter 40 value 82.489457
iter 50 value 81.401278
iter 60 value 81.324964
iter 70 value 81.320950
iter 80 value 81.109527
iter 90 value 80.769175
iter 100 value 80.621850
final value 80.621850
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 98.679161
iter 10 value 94.490522
iter 20 value 94.434710
iter 30 value 85.781808
iter 40 value 85.427931
iter 50 value 80.540774
iter 60 value 80.092106
iter 70 value 79.729889
iter 80 value 79.615078
iter 90 value 79.484721
iter 100 value 79.484304
final value 79.484304
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 111.999786
iter 10 value 94.474787
iter 20 value 94.426555
final value 94.424959
converged
Fitting Repeat 1
# weights: 103
initial value 96.231519
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 105.959427
final value 94.354396
converged
Fitting Repeat 3
# weights: 103
initial value 97.267427
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 101.728819
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 100.715720
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 103.675539
iter 10 value 94.450026
final value 94.448053
converged
Fitting Repeat 2
# weights: 305
initial value 116.021911
iter 10 value 94.342266
iter 20 value 94.309530
final value 94.309524
converged
Fitting Repeat 3
# weights: 305
initial value 96.758784
iter 10 value 93.464290
final value 93.464286
converged
Fitting Repeat 4
# weights: 305
initial value 107.501841
iter 10 value 94.164132
iter 20 value 94.127703
final value 94.076279
converged
Fitting Repeat 5
# weights: 305
initial value 100.872644
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 105.620344
iter 10 value 94.457149
iter 20 value 94.448105
final value 94.448052
converged
Fitting Repeat 2
# weights: 507
initial value 95.051368
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 118.711166
final value 94.354396
converged
Fitting Repeat 4
# weights: 507
initial value 101.128140
iter 10 value 94.228736
iter 20 value 94.082831
final value 94.076279
converged
Fitting Repeat 5
# weights: 507
initial value 117.494485
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 98.912037
iter 10 value 94.483100
iter 20 value 94.289849
iter 30 value 94.189757
iter 40 value 94.135388
iter 50 value 92.570933
iter 60 value 87.067116
iter 70 value 85.980695
iter 80 value 85.327114
iter 90 value 85.038512
iter 100 value 84.811906
final value 84.811906
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 98.514494
iter 10 value 94.539057
iter 20 value 92.857732
iter 30 value 86.461080
iter 40 value 83.627073
iter 50 value 83.252274
iter 60 value 82.594099
iter 70 value 82.373009
iter 70 value 82.373009
final value 82.373009
converged
Fitting Repeat 3
# weights: 103
initial value 101.209936
iter 10 value 94.486545
iter 20 value 94.394384
iter 30 value 92.440439
iter 40 value 91.878765
iter 50 value 87.487386
iter 60 value 85.768703
iter 70 value 85.239850
iter 80 value 84.780591
iter 90 value 84.355574
final value 84.333668
converged
Fitting Repeat 4
# weights: 103
initial value 98.836896
iter 10 value 94.513051
iter 20 value 91.735032
iter 30 value 89.743323
iter 40 value 87.497765
iter 50 value 86.573726
iter 60 value 86.316985
iter 70 value 85.935540
iter 80 value 82.607534
iter 90 value 82.221052
final value 82.115191
converged
Fitting Repeat 5
# weights: 103
initial value 97.521611
iter 10 value 94.488443
iter 20 value 93.998595
iter 30 value 93.857539
iter 40 value 93.830728
iter 50 value 93.829636
iter 60 value 93.829304
iter 70 value 90.922391
iter 80 value 88.159572
iter 90 value 88.044206
iter 100 value 86.747288
final value 86.747288
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 101.807862
iter 10 value 94.400886
iter 20 value 89.035175
iter 30 value 86.456141
iter 40 value 85.567651
iter 50 value 85.287191
iter 60 value 84.812680
iter 70 value 84.385591
iter 80 value 83.464136
iter 90 value 82.434555
iter 100 value 82.255805
final value 82.255805
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 103.075947
iter 10 value 94.631100
iter 20 value 90.828326
iter 30 value 88.538009
iter 40 value 88.041769
iter 50 value 87.934765
iter 60 value 85.103382
iter 70 value 84.430125
iter 80 value 83.758977
iter 90 value 82.134284
iter 100 value 81.222981
final value 81.222981
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 99.656306
iter 10 value 94.525405
iter 20 value 94.286631
iter 30 value 87.030616
iter 40 value 86.569638
iter 50 value 85.644914
iter 60 value 84.677416
iter 70 value 84.504810
iter 80 value 83.948273
iter 90 value 82.800770
iter 100 value 82.195968
final value 82.195968
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 103.426731
iter 10 value 94.395306
iter 20 value 91.862917
iter 30 value 89.300669
iter 40 value 84.249792
iter 50 value 82.419292
iter 60 value 81.740687
iter 70 value 81.160448
iter 80 value 81.119507
iter 90 value 81.066656
iter 100 value 81.040568
final value 81.040568
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 108.726342
iter 10 value 94.458087
iter 20 value 92.751491
iter 30 value 91.945842
iter 40 value 86.957798
iter 50 value 86.405013
iter 60 value 85.440895
iter 70 value 83.429523
iter 80 value 82.349562
iter 90 value 81.775734
iter 100 value 81.157164
final value 81.157164
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 127.247892
iter 10 value 94.463757
iter 20 value 94.178249
iter 30 value 92.017298
iter 40 value 88.878361
iter 50 value 86.297145
iter 60 value 84.405019
iter 70 value 81.748014
iter 80 value 80.994570
iter 90 value 80.930656
iter 100 value 80.682773
final value 80.682773
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 123.548934
iter 10 value 94.452904
iter 20 value 91.884286
iter 30 value 88.121839
iter 40 value 83.943678
iter 50 value 82.427671
iter 60 value 82.017069
iter 70 value 81.681575
iter 80 value 81.352992
iter 90 value 81.324825
iter 100 value 81.277114
final value 81.277114
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 130.119540
iter 10 value 95.929933
iter 20 value 91.024952
iter 30 value 87.136965
iter 40 value 85.006500
iter 50 value 84.442308
iter 60 value 83.214029
iter 70 value 82.432615
iter 80 value 81.661265
iter 90 value 81.491943
iter 100 value 81.288249
final value 81.288249
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 115.091413
iter 10 value 95.459849
iter 20 value 94.226892
iter 30 value 92.205418
iter 40 value 85.294583
iter 50 value 85.203724
iter 60 value 83.558005
iter 70 value 82.184793
iter 80 value 81.723237
iter 90 value 80.913367
iter 100 value 80.253339
final value 80.253339
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 108.551156
iter 10 value 94.159799
iter 20 value 87.541486
iter 30 value 85.482227
iter 40 value 85.273865
iter 50 value 85.161125
iter 60 value 83.538789
iter 70 value 81.905449
iter 80 value 81.105805
iter 90 value 80.799245
iter 100 value 80.354938
final value 80.354938
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 102.498672
final value 94.485814
converged
Fitting Repeat 2
# weights: 103
initial value 95.678591
iter 10 value 92.644093
iter 20 value 92.365335
iter 30 value 92.105849
iter 40 value 90.796318
iter 50 value 90.794605
iter 60 value 90.794137
iter 70 value 90.793423
final value 90.793386
converged
Fitting Repeat 3
# weights: 103
initial value 103.989655
final value 94.486071
converged
Fitting Repeat 4
# weights: 103
initial value 96.328996
final value 94.485810
converged
Fitting Repeat 5
# weights: 103
initial value 97.828000
final value 94.485701
converged
Fitting Repeat 1
# weights: 305
initial value 101.900328
iter 10 value 94.489638
iter 20 value 94.439736
iter 30 value 91.341476
iter 40 value 84.095309
iter 50 value 81.445492
iter 60 value 81.415869
iter 70 value 81.414957
iter 80 value 81.414219
iter 90 value 81.404405
iter 100 value 81.257249
final value 81.257249
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 96.269417
iter 10 value 94.485595
iter 20 value 91.358244
iter 30 value 90.544824
iter 40 value 90.075229
iter 50 value 90.073859
iter 60 value 90.073103
final value 90.072386
converged
Fitting Repeat 3
# weights: 305
initial value 98.846514
iter 10 value 93.608665
iter 20 value 92.221542
iter 30 value 90.793987
iter 40 value 90.681045
iter 50 value 90.596758
iter 60 value 90.596334
iter 70 value 90.596261
final value 90.596228
converged
Fitting Repeat 4
# weights: 305
initial value 120.796783
iter 10 value 94.489036
iter 20 value 91.327081
final value 88.330198
converged
Fitting Repeat 5
# weights: 305
initial value 104.828053
iter 10 value 94.488934
iter 20 value 94.484224
iter 30 value 94.299934
iter 40 value 90.230306
iter 50 value 84.887547
iter 60 value 82.649951
iter 70 value 82.510554
iter 80 value 81.110156
iter 90 value 80.597595
iter 100 value 80.589452
final value 80.589452
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 113.247219
iter 10 value 94.465888
iter 20 value 94.463427
iter 30 value 93.286279
iter 40 value 87.797153
iter 50 value 87.796241
iter 50 value 87.796241
final value 87.796195
converged
Fitting Repeat 2
# weights: 507
initial value 99.824442
iter 10 value 94.491603
iter 20 value 93.803391
iter 30 value 88.198195
iter 40 value 88.142311
iter 50 value 86.147504
iter 60 value 82.476388
iter 70 value 82.264371
iter 80 value 82.173798
iter 90 value 82.172763
iter 100 value 82.165200
final value 82.165200
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 111.723011
iter 10 value 93.576467
iter 20 value 93.570066
final value 93.568571
converged
Fitting Repeat 4
# weights: 507
initial value 131.005188
iter 10 value 94.444437
iter 20 value 94.114563
iter 30 value 88.566421
iter 40 value 87.528633
iter 50 value 86.987617
iter 60 value 86.178180
iter 70 value 84.557901
iter 80 value 84.119310
iter 90 value 82.782276
iter 100 value 81.930623
final value 81.930623
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 98.547562
iter 10 value 94.140856
iter 20 value 94.136031
iter 30 value 94.115860
iter 40 value 94.060271
iter 50 value 94.058652
iter 60 value 94.058626
iter 70 value 94.058578
final value 94.058568
converged
Fitting Repeat 1
# weights: 507
initial value 139.249549
iter 10 value 117.898546
iter 20 value 117.826290
iter 30 value 116.279550
iter 40 value 115.010655
final value 114.706405
converged
Fitting Repeat 2
# weights: 507
initial value 124.363601
iter 10 value 117.216549
iter 20 value 117.210935
iter 30 value 107.285119
iter 40 value 107.185134
iter 50 value 107.184356
iter 60 value 107.183786
iter 70 value 107.182786
iter 70 value 107.182785
final value 107.182785
converged
Fitting Repeat 3
# weights: 507
initial value 141.193110
iter 10 value 117.903020
iter 20 value 117.800538
final value 117.760033
converged
Fitting Repeat 4
# weights: 507
initial value 128.081861
iter 10 value 117.765937
iter 20 value 117.633848
iter 30 value 117.608016
iter 40 value 117.607940
iter 40 value 117.607940
iter 40 value 117.607940
final value 117.607940
converged
Fitting Repeat 5
# weights: 507
initial value 115.462921
iter 10 value 109.806005
iter 20 value 109.164118
iter 30 value 108.445100
iter 40 value 108.402955
iter 50 value 107.140933
iter 60 value 106.867063
iter 70 value 106.828106
final value 106.828101
converged
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Sat Mar 25 04:44:23 2023
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
52.396 1.379 64.790
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 36.662 | 0.444 | 37.115 | |
| FreqInteractors | 0.268 | 0.016 | 0.287 | |
| calculateAAC | 0.036 | 0.012 | 0.049 | |
| calculateAutocor | 0.692 | 0.016 | 0.709 | |
| calculateCTDC | 0.098 | 0.000 | 0.098 | |
| calculateCTDD | 0.804 | 0.008 | 0.812 | |
| calculateCTDT | 0.255 | 0.004 | 0.258 | |
| calculateCTriad | 0.422 | 0.016 | 0.437 | |
| calculateDC | 0.138 | 0.000 | 0.138 | |
| calculateF | 0.386 | 0.000 | 0.386 | |
| calculateKSAAP | 0.133 | 0.000 | 0.132 | |
| calculateQD_Sm | 2.340 | 0.055 | 2.397 | |
| calculateTC | 2.229 | 0.088 | 2.318 | |
| calculateTC_Sm | 0.343 | 0.000 | 0.344 | |
| corr_plot | 36.911 | 0.312 | 37.225 | |
| enrichfindP | 0.417 | 0.044 | 15.211 | |
| enrichfind_hp | 0.044 | 0.008 | 1.329 | |
| enrichplot | 0.336 | 0.032 | 0.368 | |
| filter_missing_values | 0.001 | 0.000 | 0.001 | |
| getFASTA | 0.700 | 0.020 | 6.803 | |
| getHPI | 0.001 | 0.000 | 0.000 | |
| get_negativePPI | 0.002 | 0.000 | 0.002 | |
| get_positivePPI | 0 | 0 | 0 | |
| impute_missing_data | 0.001 | 0.000 | 0.002 | |
| plotPPI | 0.078 | 0.000 | 0.078 | |
| pred_ensembel | 17.450 | 0.400 | 15.555 | |
| var_imp | 38.989 | 0.512 | 39.505 | |