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This page was generated on 2023-03-27 05:50:38 -0000 (Mon, 27 Mar 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-03-12 r83975) -- "Unsuffered Consequences" 6083
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BUILD results for MungeSumstats on kunpeng1


To the developers/maintainers of the MungeSumstats package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MungeSumstats.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1323/2195HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MungeSumstats 1.7.19  (landing page)
Alan Murphy
Snapshot Date: 2023-03-24 01:40:07 -0000 (Fri, 24 Mar 2023)
git_url: https://git.bioconductor.org/packages/MungeSumstats
git_branch: devel
git_last_commit: e47b9b2
git_last_commit_date: 2023-02-21 17:29:32 -0000 (Tue, 21 Feb 2023)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    ERROR  skipped

Summary

Package: MungeSumstats
Version: 1.7.19
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MungeSumstats
StartedAt: 2023-03-24 13:25:30 -0000 (Fri, 24 Mar 2023)
EndedAt: 2023-03-24 13:26:46 -0000 (Fri, 24 Mar 2023)
EllapsedTime: 76.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MungeSumstats
###
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* checking for file ‘MungeSumstats/DESCRIPTION’ ... OK
* preparing ‘MungeSumstats’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MungeSumstats.Rmd’ using rmarkdown
Quitting from lines 252-262 (MungeSumstats.Rmd) 
Error: processing vignette 'MungeSumstats.Rmd' failed with diagnostics:
Install 'SNPlocs.Hsapiens.dbSNP155.GRCh37' to use 'GRCh37' as 'ref_genome' and 155 as dbSNP version
--- failed re-building ‘MungeSumstats.Rmd’

--- re-building ‘OpenGWAS.Rmd’ using rmarkdown
--- finished re-building ‘OpenGWAS.Rmd’

--- re-building ‘docker.Rmd’ using rmarkdown
[WARNING] Could not parse YAML metadata at line 19 column 1: Unexpected '
  '
[WARNING] This document format requires a nonempty <title> element.
  Defaulting to 'docker.knit' as the title.
  To specify a title, use 'title' in metadata or --metadata title="...".
--- finished re-building ‘docker.Rmd’

SUMMARY: processing the following file failed:
  ‘MungeSumstats.Rmd’

Error: Vignette re-building failed.
Execution halted