| Back to Build/check report for BioC 3.17: simplified long |
|
This page was generated on 2023-03-27 05:50:43 -0000 (Mon, 27 Mar 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-03-12 r83975) -- "Unsuffered Consequences" | 6083 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the SC3 package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SC3.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1786/2195 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SC3 1.27.0 (landing page) Vladimir Kiselev
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | ERROR | skipped | |||||||||
| Package: SC3 |
| Version: 1.27.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data SC3 |
| StartedAt: 2023-03-24 16:19:55 -0000 (Fri, 24 Mar 2023) |
| EndedAt: 2023-03-24 16:25:23 -0000 (Fri, 24 Mar 2023) |
| EllapsedTime: 327.4 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data SC3 ### ############################################################################## ############################################################################## * checking for file ‘SC3/DESCRIPTION’ ... OK * preparing ‘SC3’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘SC3.Rmd’ using rmarkdown starting worker pid=2904720 on localhost:11374 at 16:21:07.195 starting worker pid=2904718 on localhost:11374 at 16:21:07.196 starting worker pid=2904719 on localhost:11374 at 16:21:07.202 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools starting worker pid=2904790 on localhost:11374 at 16:21:22.343 starting worker pid=2904794 on localhost:11374 at 16:21:22.343 starting worker pid=2904795 on localhost:11374 at 16:21:22.345 starting worker pid=2904796 on localhost:11374 at 16:21:22.346 starting worker pid=2904793 on localhost:11374 at 16:21:22.346 starting worker pid=2904792 on localhost:11374 at 16:21:22.348 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 loaded SC3 and set parent environment Loading required package: foreach loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment loaded SC3 and set parent environment Loading required package: foreach Loading required package: foreach loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools Loading required package: rngtools Loading required package: rngtools starting worker pid=2904912 on localhost:11374 at 16:21:32.254 starting worker pid=2904900 on localhost:11374 at 16:21:32.261 starting worker pid=2904911 on localhost:11374 at 16:21:32.262 starting worker pid=2904916 on localhost:11374 at 16:21:32.263 starting worker pid=2904905 on localhost:11374 at 16:21:32.266 starting worker pid=2904896 on localhost:11374 at 16:21:32.267 starting worker pid=2904898 on localhost:11374 at 16:21:32.271 starting worker pid=2904915 on localhost:11374 at 16:21:32.272 starting worker pid=2904899 on localhost:11374 at 16:21:32.275 starting worker pid=2904895 on localhost:11374 at 16:21:32.276 starting worker pid=2904908 on localhost:11374 at 16:21:32.277 starting worker pid=2904906 on localhost:11374 at 16:21:32.287 starting worker pid=2904897 on localhost:11374 at 16:21:32.292 starting worker pid=2904913 on localhost:11374 at 16:21:32.298 starting worker pid=2904914 on localhost:11374 at 16:21:32.300 starting worker pid=2904920 on localhost:11374 at 16:21:32.301 starting worker pid=2904903 on localhost:11374 at 16:21:32.302 starting worker pid=2904921 on localhost:11374 at 16:21:32.306 starting worker pid=2904910 on localhost:11374 at 16:21:32.322 starting worker pid=2904902 on localhost:11374 at 16:21:32.323 starting worker pid=2904907 on localhost:11374 at 16:21:32.333 starting worker pid=2904922 on localhost:11374 at 16:21:32.339 starting worker pid=2904918 on localhost:11374 at 16:21:32.341 starting worker pid=2904924 on localhost:11374 at 16:21:32.344 starting worker pid=2904904 on localhost:11374 at 16:21:32.351 starting worker pid=2904925 on localhost:11374 at 16:21:32.353 starting worker pid=2904919 on localhost:11374 at 16:21:32.353 starting worker pid=2904923 on localhost:11374 at 16:21:32.354 starting worker pid=2904917 on localhost:11374 at 16:21:32.365 starting worker pid=2904901 on localhost:11374 at 16:21:32.365 starting worker pid=2904909 on localhost:11374 at 16:21:32.370 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 loaded SC3 and set parent environment loaded SC3 and set parent environment Loading required package: foreach Loading required package: foreach Loading required package: rngtools Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach loaded SC3 and set parent environment Loading required package: rngtools Loading required package: foreach loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach loaded SC3 and set parent environment Loading required package: rngtools Loading required package: foreach loaded SC3 and set parent environment Loading required package: rngtools Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment loaded SC3 and set parent environment Loading required package: foreach Loading required package: foreach loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: rngtools Loading required package: foreach loaded SC3 and set parent environment Loading required package: rngtools Loading required package: foreach Loading required package: rngtools Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach loaded SC3 and set parent environment loaded SC3 and set parent environment Loading required package: rngtools Loading required package: foreach Loading required package: foreach Loading required package: rngtools Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach loaded SC3 and set parent environment Loading required package: rngtools Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools Loading required package: rngtools loaded SC3 and set parent environment 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|===================================================================== | 99% | |======================================================================| 100%starting worker pid=2905902 on localhost:11374 at 16:22:54.718 starting worker pid=2905895 on localhost:11374 at 16:22:54.718 starting worker pid=2905907 on localhost:11374 at 16:22:54.718 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 loaded SC3 and set parent environment Loading required package: foreach loaded SC3 and set parent environment Loading required package: rngtools Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools starting worker pid=2906337 on localhost:11374 at 16:23:04.778 starting worker pid=2906342 on localhost:11374 at 16:23:04.780 starting worker pid=2906335 on localhost:11374 at 16:23:04.781 starting worker pid=2906339 on localhost:11374 at 16:23:04.781 starting worker pid=2906341 on localhost:11374 at 16:23:04.781 starting worker pid=2906343 on localhost:11374 at 16:23:04.782 starting worker pid=2906336 on localhost:11374 at 16:23:04.782 starting worker pid=2906338 on localhost:11374 at 16:23:04.783 starting worker pid=2906340 on localhost:11374 at 16:23:04.784 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach loaded SC3 and set parent environment Loading required package: foreach loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools Loading required package: rngtools Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach loaded SC3 and set parent environment Loading required package: rngtools Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools starting worker pid=2907534 on localhost:11374 at 16:24:22.349 starting worker pid=2907535 on localhost:11374 at 16:24:22.351 starting worker pid=2907536 on localhost:11374 at 16:24:22.355 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools starting worker pid=2907654 on localhost:11374 at 16:24:37.181 starting worker pid=2907655 on localhost:11374 at 16:24:37.182 starting worker pid=2907658 on localhost:11374 at 16:24:37.183 starting worker pid=2907657 on localhost:11374 at 16:24:37.185 starting worker pid=2907656 on localhost:11374 at 16:24:37.186 starting worker pid=2907653 on localhost:11374 at 16:24:37.186 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment loaded SC3 and set parent environment Loading required package: foreach Loading required package: foreach Loading required package: rngtools Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools loaded SC3 and set parent environment loaded SC3 and set parent environment Loading required package: foreach Loading required package: foreach Loading required package: rngtools Loading required package: rngtools starting worker pid=2907871 on localhost:11374 at 16:24:47.096 starting worker pid=2907879 on localhost:11374 at 16:24:47.104 starting worker pid=2907872 on localhost:11374 at 16:24:47.107 starting worker pid=2907876 on localhost:11374 at 16:24:47.109 starting worker pid=2907890 on localhost:11374 at 16:24:47.109 starting worker pid=2907894 on localhost:11374 at 16:24:47.109 starting worker pid=2907881 on localhost:11374 at 16:24:47.117 starting worker pid=2907874 on localhost:11374 at 16:24:47.118 starting worker pid=2907896 on localhost:11374 at 16:24:47.119 starting worker pid=2907878 on localhost:11374 at 16:24:47.127 starting worker pid=2907870 on localhost:11374 at 16:24:47.127 starting worker pid=2907875 on localhost:11374 at 16:24:47.128 starting worker pid=2907873 on localhost:11374 at 16:24:47.132 starting worker pid=2907891 on localhost:11374 at 16:24:47.139 starting worker pid=2907893 on localhost:11374 at 16:24:47.155 starting worker pid=2907892 on localhost:11374 at 16:24:47.168 starting worker pid=2907895 on localhost:11374 at 16:24:47.170 starting worker pid=2907885 on localhost:11374 at 16:24:47.174 starting worker pid=2907882 on localhost:11374 at 16:24:47.183 starting worker pid=2907886 on localhost:11374 at 16:24:47.184 starting worker pid=2907884 on localhost:11374 at 16:24:47.185 starting worker pid=2907887 on localhost:11374 at 16:24:47.190 starting worker pid=2907869 on localhost:11374 at 16:24:47.191 starting worker pid=2907888 on localhost:11374 at 16:24:47.193 starting worker pid=2907897 on localhost:11374 at 16:24:47.199 starting worker pid=2907899 on localhost:11374 at 16:24:47.199 starting worker pid=2907889 on localhost:11374 at 16:24:47.200 starting worker pid=2907883 on localhost:11374 at 16:24:47.203 starting worker pid=2907880 on localhost:11374 at 16:24:47.203 starting worker pid=2907898 on localhost:11374 at 16:24:47.203 starting worker pid=2907877 on localhost:11374 at 16:24:47.206 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 Loading required package: SC3 loaded SC3 and set parent environment loaded SC3 and set parent environment loaded SC3 and set parent environment Loading required package: foreach Loading required package: foreach Loading required package: foreach Loading required package: rngtools Loading required package: rngtools Loading required package: rngtools loaded SC3 and set parent environment loaded SC3 and set parent environment loaded SC3 and set parent environment loaded SC3 and set parent environment loaded SC3 and set parent environment Loading required package: foreach Loading required package: foreach Loading required package: foreach Loading required package: foreach Loading required package: foreach Loading required package: rngtools Loading required package: rngtools Loading required package: rngtools Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach loaded SC3 and set parent environment Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Loading required package: rngtools Loading required package: foreach Loading required package: rngtools Loading required package: rngtools loaded SC3 and set parent environment Loading required package: foreach Error in unserialize(node$con) : error reading from connection Calls: <Anonymous> ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize Error in unserialize(node$con) : error reading from connection Calls: <Anonymous> ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize Error in unserialize(node$con) : error reading from connection Calls: <Anonymous> ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize Error in unserialize(node$con) : error reading from connection Calls: <Anonymous> ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize Error in unserialize(node$con) : error reading from connection Calls: <Anonymous> ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize Error in unserialize(node$con) : error reading from connection Calls: <Anonymous> ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize Error in unserialize(node$con) : error reading from connection Calls: <Anonymous> ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize Error in unserialize(node$con) : error reading from connection Calls: <Anonymous> ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize Killed Error in unserialize(node$con) : error reading from connection Calls: <Anonymous> ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize Error in unserialize(node$con) : error reading from connection Calls: <Anonymous> ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize Error in unserialize(node$con) : error reading from connection Calls: <Anonymous> ... doTryCatch -> recvData -> recvData.SOCKnode -> unserialize Execution halted Execution halted Execution halted Execution halted Execution halted Execution halted Execution halted Execution halted Execution halted Execution halted Execution halted