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This page was generated on 2023-03-27 05:50:44 -0000 (Mon, 27 Mar 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-03-12 r83975) -- "Unsuffered Consequences" | 6083 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the STAN package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/STAN.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1987/2195 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| STAN 2.27.0 (landing page) Rafael Campos-Martin
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | ERROR | ERROR | skipped | |||||||||
| Package: STAN |
| Version: 2.27.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data STAN |
| StartedAt: 2023-03-24 18:29:01 -0000 (Fri, 24 Mar 2023) |
| EndedAt: 2023-03-24 18:29:13 -0000 (Fri, 24 Mar 2023) |
| EllapsedTime: 12.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data STAN
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* checking for file ‘STAN/DESCRIPTION’ ... OK
* preparing ‘STAN’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
-----------------------------------
* installing *source* package ‘STAN’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I/usr/local/include -D_RDLL_ -fopenmp -fPIC -g -O2 -c Bernoulli.cpp -o Bernoulli.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I/usr/local/include -D_RDLL_ -fopenmp -fPIC -g -O2 -c EmissionFactory.cpp -o EmissionFactory.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I/usr/local/include -D_RDLL_ -fopenmp -fPIC -g -O2 -c EmissionFunction.cpp -o EmissionFunction.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I/usr/local/include -D_RDLL_ -fopenmp -fPIC -g -O2 -c HMM.cpp -o HMM.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I/usr/local/include -D_RDLL_ -fopenmp -fPIC -g -O2 -c InitialProbability.cpp -o InitialProbability.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I/usr/local/include -D_RDLL_ -fopenmp -fPIC -g -O2 -c JointlyIndependent.cpp -o JointlyIndependent.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I/usr/local/include -D_RDLL_ -fopenmp -fPIC -g -O2 -c MemoryAllocation.cpp -o MemoryAllocation.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I/usr/local/include -D_RDLL_ -fopenmp -fPIC -g -O2 -c Multinomial.cpp -o Multinomial.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I/usr/local/include -D_RDLL_ -fopenmp -fPIC -g -O2 -c MultivariateGaussian.cpp -o MultivariateGaussian.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I/usr/local/include -D_RDLL_ -fopenmp -fPIC -g -O2 -c NegativeBinomial.cpp -o NegativeBinomial.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I/usr/local/include -D_RDLL_ -fopenmp -fPIC -g -O2 -c ParamContainerEmissions.cpp -o ParamContainerEmissions.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I/usr/local/include -D_RDLL_ -fopenmp -fPIC -g -O2 -c Poisson.cpp -o Poisson.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I/usr/local/include -D_RDLL_ -fopenmp -fPIC -g -O2 -c PoissonLogNormal.cpp -o PoissonLogNormal.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I/usr/local/include -D_RDLL_ -fopenmp -fPIC -g -O2 -c RAccessUtils.cpp -o RAccessUtils.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I/usr/local/include -D_RDLL_ -fopenmp -fPIC -g -O2 -c RWrapper.cpp -o RWrapper.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I/usr/local/include -D_RDLL_ -fopenmp -fPIC -g -O2 -c TransitionMatrix.cpp -o TransitionMatrix.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I/usr/local/include -D_RDLL_ -fopenmp -fPIC -g -O2 -c matUtils.cpp -o matUtils.o
matUtils.cpp: In function ‘double matrixDet(double**, int)’:
matUtils.cpp:114:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
114 | for (register int i = 0 ; i < myN ; i++)
| ^
matUtils.cpp:115:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
115 | for (register int j = i ; j < myldz ; j++)
| ^
matUtils.cpp:118:20: error: too few arguments to function ‘void dspev_(const char*, const char*, const int*, double*, double*, double*, const int*, double*, int*, size_t, size_t)’
118 | F77_NAME(dspev)("V", "U", &myN, myAP, myW, myZ, &myldz, myWork, &myInfo) ;
| ^
In file included from /home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include/R.h:78,
from matUtils.h:6,
from matUtils.cpp:2:
/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include/R_ext/Lapack.h:1050:10: note: declared here
1050 | F77_NAME(dspev)(const char* jobz, const char* uplo, const int* n,
| ^~~~~
/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include/R_ext/RS.h:77:25: note: in definition of macro ‘F77_CALL’
77 | # define F77_CALL(x) x ## _
| ^
/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include/R_ext/Lapack.h:1050:1: note: in expansion of macro ‘F77_NAME’
1050 | F77_NAME(dspev)(const char* jobz, const char* uplo, const int* n,
| ^~~~~~~~
matUtils.cpp:125:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
125 | for (register int i = 0 ; i < myNCol ; i++)
| ^
make: *** [/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/etc/Makeconf:198: matUtils.o] Error 1
ERROR: compilation failed for package ‘STAN’
* removing ‘/tmp/Rtmp4M0mg1/Rinst2fcadc4f406dae/STAN’
-----------------------------------
ERROR: package installation failed