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This page was generated on 2023-03-27 05:50:44 -0000 (Mon, 27 Mar 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-03-12 r83975) -- "Unsuffered Consequences" 6083
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BUILD results for SomaticSignatures on kunpeng1


To the developers/maintainers of the SomaticSignatures package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SomaticSignatures.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1931/2195HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SomaticSignatures 2.35.0  (landing page)
Julian Gehring
Snapshot Date: 2023-03-24 01:40:07 -0000 (Fri, 24 Mar 2023)
git_url: https://git.bioconductor.org/packages/SomaticSignatures
git_branch: devel
git_last_commit: 4de401f
git_last_commit_date: 2022-11-01 15:09:11 -0000 (Tue, 01 Nov 2022)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    ERROR  skipped

Summary

Package: SomaticSignatures
Version: 2.35.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data SomaticSignatures
StartedAt: 2023-03-24 18:01:07 -0000 (Fri, 24 Mar 2023)
EndedAt: 2023-03-24 18:02:40 -0000 (Fri, 24 Mar 2023)
EllapsedTime: 93.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data SomaticSignatures
###
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* checking for file ‘SomaticSignatures/DESCRIPTION’ ... OK
* preparing ‘SomaticSignatures’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘SomaticSignatures-vignette.Rhtml’ using knitr
Quitting from lines 339-341 (SomaticSignatures-vignette.Rhtml) 
Error: processing vignette 'SomaticSignatures-vignette.Rhtml' failed with diagnostics:
there is no package called 'BSgenome.Hsapiens.1000genomes.hs37d5'
--- failed re-building ‘SomaticSignatures-vignette.Rhtml’

SUMMARY: processing the following file failed:
  ‘SomaticSignatures-vignette.Rhtml’

Error: Vignette re-building failed.
Execution halted