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This page was generated on 2023-03-27 05:50:33 -0000 (Mon, 27 Mar 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-03-12 r83975) -- "Unsuffered Consequences" 6083
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CHECK results for enrichplot on kunpeng1


To the developers/maintainers of the enrichplot package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/enrichplot.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 620/2195HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
enrichplot 1.19.1  (landing page)
Guangchuang Yu
Snapshot Date: 2023-03-24 01:40:07 -0000 (Fri, 24 Mar 2023)
git_url: https://git.bioconductor.org/packages/enrichplot
git_branch: devel
git_last_commit: d367cea
git_last_commit_date: 2022-12-05 01:50:24 -0000 (Mon, 05 Dec 2022)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    OK    WARNINGS  

Summary

Package: enrichplot
Version: 1.19.1
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:enrichplot.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings enrichplot_1.19.1.tar.gz
StartedAt: 2023-03-25 01:47:22 -0000 (Sat, 25 Mar 2023)
EndedAt: 2023-03-25 01:50:54 -0000 (Sat, 25 Mar 2023)
EllapsedTime: 212.2 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: enrichplot.Rcheck
Warnings: 1

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:enrichplot.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings enrichplot_1.19.1.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/enrichplot.Rcheck’
* using R Under development (unstable) (2023-03-12 r83975)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.2 LTS
* using session charset: UTF-8
* checking for file ‘enrichplot/DESCRIPTION’ ... OK
* this is package ‘enrichplot’ version ‘1.19.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘enrichplot’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... WARNING
fortify:
  function(model, data, ...)
fortify.compareClusterResult:
  function(model, data, showCategory, by, split, includeAll)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
gseaplot  17.335  1.351  10.494
ridgeplot 15.090  1.044   7.910
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘enrichplot.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING
See
  ‘/home/biocbuild/bbs-3.17-bioc/meat/enrichplot.Rcheck/00check.log’
for details.



Installation output

enrichplot.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL enrichplot
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library’
* installing *source* package ‘enrichplot’ ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (enrichplot)

Tests output


Example timings

enrichplot.Rcheck/enrichplot-Ex.timings

nameusersystemelapsed
barplot.enrichResult2.6220.1242.746
cnetplot000
color_palette0.0000.0030.003
dotplot000
drag_network000
emapplot000
goplot0.0010.0000.001
gseaplot17.335 1.35110.494
heatplot1.4290.0641.493
pairwise_termsim000
ridgeplot15.090 1.044 7.910
ssplot0.0000.0000.001
treeplot0.0010.0000.001
upsetplot-methods1.8770.0711.950