Build/check report for BioC 3.17 - CHECK results for graper on kunpeng1

Hostname	OS	Arch (*)	R version	Installed pkgs
kunpeng1	Linux (Ubuntu 22.04.1 LTS)	aarch64	R Under development (unstable) (2023-03-12 r83975) -- "Unsuffered Consequences"	6083
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

Package: graper

Version: 1.15.0

Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings graper_1.15.0.tar.gz

StartedAt: 2023-03-25 03:57:50 -0000 (Sat, 25 Mar 2023)

EndedAt: 2023-03-25 03:59:41 -0000 (Sat, 25 Mar 2023)

EllapsedTime: 110.2 seconds

RetCode: 0

Status: OK

CheckDir: graper.Rcheck

Warnings: 0

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings graper_1.15.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/graper.Rcheck’
* using R Under development (unstable) (2023-03-12 r83975)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.2 LTS
* using session charset: UTF-8
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.15.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* used C++ compiler: ‘g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
* checking C++ specification ... NOTE
  Specified C++11: please drop specification unless essential
* checking installed package size ... NOTE
  installed size is  6.1Mb
  sub-directories of 1Mb or more:
    libs   6.0Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘example_linear.Rmd’ using ‘UTF-8’... OK
  ‘example_logistic.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.17-bioc/meat/graper.Rcheck/00check.log’
for details.

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL graper
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library’
* installing *source* package ‘graper’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
using C++11
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -c fit_graper.cpp -o fit_graper.o
g++ -std=gnu++11 -shared -L/usr/local/lib -o graper.so RcppExports.o fit_graper.o -llapack -L/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/lib -lRblas -lgfortran -lm
installing to /home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/00LOCK-graper/00new/graper/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (graper)


R Under development (unstable) (2023-03-12 r83975) -- "Unsuffered Consequences"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(graper)
> 
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-882.093
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-603.982
ELB improved by 278.111

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-538.792
ELB improved by 65.1903

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-489.69
ELB improved by 49.1015

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-466.32
ELB improved by 23.3705

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.842
ELB improved by 11.4775

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.561
ELB improved by 8.28147

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.108
ELB improved by 7.45272

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.185
ELB improved by 6.92287

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.283
ELB improved by 5.90218

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.717
ELB improved by 4.56635

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.41
ELB improved by 3.30622

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.058
ELB improved by 2.35252

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.257
ELB improved by 1.80089

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.753
ELB improved by 1.50383

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.574
ELB improved by 1.1794

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.718
ELB improved by 0.855284

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.07
ELB improved by 0.648774

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.542
ELB improved by 0.528032

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.098
ELB improved by 0.443389

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.73
ELB improved by 0.368734

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.428
ELB improved by 0.301807

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.178
ELB improved by 0.249957

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.963
ELB improved by 0.214403

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.773
ELB improved by 0.19069

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.598
ELB improved by 0.174275

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.436
ELB improved by 0.162327

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.283
ELB improved by 0.153318

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.136
ELB improved by 0.146426

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.995
ELB improved by 0.141199

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.858
ELB improved by 0.137386

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.723
ELB improved by 0.13487

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.589
ELB improved by 0.133629

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.456
ELB improved by 0.133709

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.32
ELB improved by 0.135178

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.182
ELB improved by 0.138043

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.04
ELB improved by 0.142106

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.893
ELB improved by 0.146791

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.742
ELB improved by 0.151102

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.588
ELB improved by 0.15392

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.434
ELB improved by 0.154589

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.281
ELB improved by 0.153271

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.13
ELB improved by 0.150676

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.982
ELB improved by 0.147533

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.838
ELB improved by 0.144302

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.697
ELB improved by 0.141191

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.559
ELB improved by 0.138259

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.423
ELB improved by 0.135492

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.29
ELB improved by 0.132833

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.16
ELB improved by 0.130209

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.032
ELB improved by 0.127538

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.908
ELB improved by 0.124743

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.786
ELB improved by 0.121761

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.667
ELB improved by 0.11855

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.552
ELB improved by 0.115086

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.441
ELB improved by 0.111373

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.334
ELB improved by 0.107429

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.23
ELB improved by 0.103289

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.131
ELB improved by 0.0989965

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.037
ELB improved by 0.0945971

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.947
ELB improved by 0.0901372

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.861
ELB improved by 0.0856597

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.78
ELB improved by 0.0812031

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.703
ELB improved by 0.0768

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.63
ELB improved by 0.0724769

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.562
ELB improved by 0.0682537

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.498
ELB improved by 0.0641437

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.438
ELB improved by 0.0601544

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.382
ELB improved by 0.0562893

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.329
ELB improved by 0.0525498

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.28
ELB improved by 0.048938

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.235
ELB improved by 0.0454576

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.192
ELB improved by 0.0421155

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.154
ELB improved by 0.0389212

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.118
ELB improved by 0.0358858

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.085
ELB improved by 0.0330204

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.054
ELB improved by 0.0303351

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.026
ELB improved by 0.0278375

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.001
ELB improved by 0.0255319

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.978
ELB improved by 0.0234196

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.956
ELB improved by 0.0214987

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.936
ELB improved by 0.0197647

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.918
ELB improved by 0.018211

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.901
ELB improved by 0.01683

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.886
ELB improved by 0.015613

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.871
ELB improved by 0.0145512

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.857
ELB improved by 0.0136357

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.845
ELB improved by 0.0128581

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.832
ELB improved by 0.0122102

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.821
ELB improved by 0.0116841

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.809
ELB improved by 0.0112717

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.798
ELB improved by 0.0109637

iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.788
ELB improved by 0.0107492

iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.777
ELB improved by 0.0106134

iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.767
ELB improved by 0.0105367

iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.756
ELB improved by 0.010493

iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.746
ELB improved by 0.0104491

iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.735
ELB improved by 0.0103657

iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.725
ELB improved by 0.0102019

iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.715
ELB improved by 0.00992152

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-853.911
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-579.045
ELB improved by 274.867

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-517.961
ELB improved by 61.0837

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-474.968
ELB improved by 42.9928

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-455.521
ELB improved by 19.447

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.103
ELB improved by 8.41864

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.336
ELB improved by 6.76603

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.614
ELB improved by 7.72239

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.385
ELB improved by 9.22868

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.716
ELB improved by 9.66977

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.639
ELB improved by 8.07628

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.074
ELB improved by 5.56517

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.443
ELB improved by 3.63149

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.919
ELB improved by 2.52378

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.185
ELB improved by 1.73375

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.989
ELB improved by 1.19587

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.088
ELB improved by 0.901402

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.344
ELB improved by 0.744052

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.69
ELB improved by 0.654186

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.093
ELB improved by 0.596838

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.538
ELB improved by 0.554924

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.018
ELB improved by 0.520327

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.528
ELB improved by 0.489625

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.066
ELB improved by 0.461868

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.629
ELB improved by 0.437276

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.212
ELB improved by 0.416455

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.812
ELB improved by 0.399962

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.424
ELB improved by 0.388116

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.043
ELB improved by 0.380939

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.665
ELB improved by 0.378155

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.286
ELB improved by 0.379182

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.903
ELB improved by 0.383128

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.514
ELB improved by 0.388787

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.119
ELB improved by 0.394677

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.72
ELB improved by 0.399153

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.32
ELB improved by 0.400612

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.922
ELB improved by 0.397768

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.532
ELB improved by 0.389838

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.156
ELB improved by 0.376335

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.8
ELB improved by 0.356079

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.474
ELB improved by 0.325917

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.191
ELB improved by 0.282384

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.963
ELB improved by 0.228104

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.79
ELB improved by 0.173487

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.662
ELB improved by 0.128028

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.567
ELB improved by 0.0944045

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.497
ELB improved by 0.0707888

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.442
ELB improved by 0.0543777

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.399
ELB improved by 0.0428626

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.365
ELB improved by 0.0346339

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.336
ELB improved by 0.0286263

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.312
ELB improved by 0.024141

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.291
ELB improved by 0.0207164

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.273
ELB improved by 0.018044

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.257
ELB improved by 0.0159145

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.243
ELB improved by 0.0141845

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.23
ELB improved by 0.0127541

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.219
ELB improved by 0.0115526

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.208
ELB improved by 0.0105297

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.199
ELB improved by 0.00964842

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-877.427
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-604.035
ELB improved by 273.393

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-540.581
ELB improved by 63.4539

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-493.974
ELB improved by 46.6071

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-471.222
ELB improved by 22.7513

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-461.571
ELB improved by 9.65133

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-456.354
ELB improved by 5.21727

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-452.161
ELB improved by 4.19266

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.089
ELB improved by 4.0721

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.854
ELB improved by 4.23525

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.369
ELB improved by 4.485

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.767
ELB improved by 4.60178

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.484
ELB improved by 4.28271

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.03
ELB improved by 3.45445

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.6
ELB improved by 2.42943

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.035
ELB improved by 1.5658

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.041
ELB improved by 0.993985

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.385
ELB improved by 0.65561

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.926
ELB improved by 0.458626

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.586
ELB improved by 0.340192

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.321
ELB improved by 0.265371

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.105
ELB improved by 0.215399

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.925
ELB improved by 0.180053

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.772
ELB improved by 0.153686

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.638
ELB improved by 0.133134

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.522
ELB improved by 0.116574

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.419
ELB improved by 0.102904

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.328
ELB improved by 0.0914247

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.246
ELB improved by 0.0816609

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.173
ELB improved by 0.0732757

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.107
ELB improved by 0.0660188

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.047
ELB improved by 0.0596984

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.993
ELB improved by 0.0541638

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.943
ELB improved by 0.0492945

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.898
ELB improved by 0.0449923

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.857
ELB improved by 0.0411766

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.819
ELB improved by 0.0377805

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.785
ELB improved by 0.034748

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.753
ELB improved by 0.0320318

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.723
ELB improved by 0.029592

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.696
ELB improved by 0.0273945

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.67
ELB improved by 0.0254103

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.647
ELB improved by 0.0236142

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.625
ELB improved by 0.0219848

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.604
ELB improved by 0.0205033

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.585
ELB improved by 0.0191537

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.567
ELB improved by 0.0179218

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.55
ELB improved by 0.0167953

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.535
ELB improved by 0.0157635

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.52
ELB improved by 0.0148169

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.506
ELB improved by 0.0139471

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.493
ELB improved by 0.0131468

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.48
ELB improved by 0.0124095

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.469
ELB improved by 0.0117292

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.457
ELB improved by 0.011101

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.447
ELB improved by 0.0105201

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.437
ELB improved by 0.00998233

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-856.754
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-581.21
ELB improved by 275.544

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-521.863
ELB improved by 59.3471

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-483.17
ELB improved by 38.6935

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-464.402
ELB improved by 18.7675

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-455.666
ELB improved by 8.73599

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.647
ELB improved by 5.01961

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.448
ELB improved by 4.19843

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.34
ELB improved by 4.10815

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.35
ELB improved by 3.99

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.783
ELB improved by 3.56674

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.947
ELB improved by 2.83644

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.921
ELB improved by 2.02578

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.563
ELB improved by 1.35816

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.649
ELB improved by 0.914054

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.991
ELB improved by 0.658122

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.471
ELB improved by 0.519508

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.03
ELB improved by 0.441267

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.641
ELB improved by 0.389295

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.291
ELB improved by 0.349528

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.97
ELB improved by 0.320735

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.665
ELB improved by 0.304956

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.363
ELB improved by 0.302641

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.052
ELB improved by 0.310869

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.731
ELB improved by 0.320942

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.411
ELB improved by 0.319929

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.111
ELB improved by 0.300175

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.845
ELB improved by 0.266035

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.615
ELB improved by 0.229478

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.415
ELB improved by 0.19986

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.236
ELB improved by 0.179242

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.071
ELB improved by 0.165609

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.914
ELB improved by 0.156487

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.764
ELB improved by 0.150145

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.618
ELB improved by 0.145574

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.476
ELB improved by 0.142233

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.336
ELB improved by 0.139848

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.198
ELB improved by 0.138295

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.06
ELB improved by 0.137545

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.923
ELB improved by 0.137633

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.784
ELB improved by 0.138643

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.643
ELB improved by 0.140685

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.5
ELB improved by 0.143866

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.351
ELB improved by 0.148208

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.198
ELB improved by 0.153525

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.039
ELB improved by 0.159261

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.874
ELB improved by 0.164407

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.707
ELB improved by 0.167704

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.538
ELB improved by 0.168181

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.373
ELB improved by 0.165666

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.212
ELB improved by 0.160767

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.058
ELB improved by 0.154378

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.91
ELB improved by 0.147222

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.771
ELB improved by 0.139712

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.639
ELB improved by 0.132024

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.514
ELB improved by 0.124213

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.398
ELB improved by 0.116292

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.29
ELB improved by 0.108278

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.19
ELB improved by 0.100211

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.097
ELB improved by 0.0921549

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.013
ELB improved by 0.0841964

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.937
ELB improved by 0.0764343

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.868
ELB improved by 0.0689684

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.806
ELB improved by 0.0618887

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.751
ELB improved by 0.0552675

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.701
ELB improved by 0.0491546

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.658
ELB improved by 0.0435771

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.619
ELB improved by 0.0385406

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.585
ELB improved by 0.0340336

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.555
ELB improved by 0.0300312

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.529
ELB improved by 0.0264993

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.505
ELB improved by 0.0233989

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.485
ELB improved by 0.0206882

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.466
ELB improved by 0.0183258

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.45
ELB improved by 0.0162716

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.436
ELB improved by 0.0144881

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.423
ELB improved by 0.012941

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.411
ELB improved by 0.0115991

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.401
ELB improved by 0.0104351

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.391
ELB improved by 0.00942443

ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
> 
> proc.time()
   user  system elapsed 
  2.747   0.203   2.944

name	user	system	elapsed
coef.graper	0.088	0.005	0.094
getPIPs	0.080	0.006	0.086
graper	0.140	0.008	0.149
makeExampleData	0.013	0.001	0.013
makeExampleDataWithUnequalGroups	0.015	0.000	0.015
plotELBO	0.284	0.008	0.291
plotGroupPenalties	1.108	0.008	1.116
plotPosterior	0.685	0.019	0.704
predict.graper	3.167	0.040	3.208
print.graper	0.084	0.004	0.088

CHECK results for graper on kunpeng1

Summary

Command output

Installation output

Tests output

Example timings