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This page was generated on 2023-03-27 05:50:40 -0000 (Mon, 27 Mar 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-03-12 r83975) -- "Unsuffered Consequences" 6083
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BUILD results for r3Cseq on kunpeng1


To the developers/maintainers of the r3Cseq package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/r3Cseq.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1596/2195HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
r3Cseq 1.45.0  (landing page)
Supat Thongjuea or
Snapshot Date: 2023-03-24 01:40:07 -0000 (Fri, 24 Mar 2023)
git_url: https://git.bioconductor.org/packages/r3Cseq
git_branch: devel
git_last_commit: c39e8b0
git_last_commit_date: 2022-11-01 15:06:25 -0000 (Tue, 01 Nov 2022)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    ERROR  skipped

Summary

Package: r3Cseq
Version: 1.45.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data r3Cseq
StartedAt: 2023-03-24 14:57:26 -0000 (Fri, 24 Mar 2023)
EndedAt: 2023-03-24 14:58:30 -0000 (Fri, 24 Mar 2023)
EllapsedTime: 64.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data r3Cseq
###
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* checking for file ‘r3Cseq/DESCRIPTION’ ... OK
* preparing ‘r3Cseq’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘r3Cseq.Rnw’ using Sweave
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce,
    anyDuplicated, aperm, append, as.data.frame,
    basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, mapply, match,
    mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff,
    sort, table, tapply, union, unique, unsplit,
    which.max, which.min

Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    I, expand.grid, unname

Loading required package: IRanges
Loading required package: GenomeInfoDb
Loading required package: Rsamtools
Loading required package: Biostrings
Loading required package: XVector

Attaching package: 'Biostrings'

The following object is masked from 'package:base':

    strsplit

Loading required package: rtracklayer
Loading required package: VGAM
Loading required package: splines
Loading required package: qvalue
No methods found in package 'Biostrings' for request: 'DNAString' when loading 'r3Cseq'

Error: processing vignette 'r3Cseq.Rnw' failed with diagnostics:
 chunk 7 
Error in library(BSgenome.Mmusculus.UCSC.mm9.masked) : 
  there is no package called 'BSgenome.Mmusculus.UCSC.mm9.masked'

--- failed re-building 'r3Cseq.Rnw'

SUMMARY: processing the following file failed:
  'r3Cseq.Rnw'

Error: Vignette re-building failed.
Execution halted