This page was generated on 2023-03-27 05:50:40 -0000 (Mon, 27 Mar 2023).
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### Running command:
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### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data r3Cseq
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* checking for file ‘r3Cseq/DESCRIPTION’ ... OK
* preparing ‘r3Cseq’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘r3Cseq.Rnw’ using Sweave
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce,
anyDuplicated, aperm, append, as.data.frame,
basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl,
intersect, is.unsorted, lapply, mapply, match,
mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff,
sort, table, tapply, union, unique, unsplit,
which.max, which.min
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following objects are masked from 'package:base':
I, expand.grid, unname
Loading required package: IRanges
Loading required package: GenomeInfoDb
Loading required package: Rsamtools
Loading required package: Biostrings
Loading required package: XVector
Attaching package: 'Biostrings'
The following object is masked from 'package:base':
strsplit
Loading required package: rtracklayer
Loading required package: VGAM
Loading required package: splines
Loading required package: qvalue
No methods found in package 'Biostrings' for request: 'DNAString' when loading 'r3Cseq'
Error: processing vignette 'r3Cseq.Rnw' failed with diagnostics:
chunk 7
Error in library(BSgenome.Mmusculus.UCSC.mm9.masked) :
there is no package called 'BSgenome.Mmusculus.UCSC.mm9.masked'
--- failed re-building 'r3Cseq.Rnw'
SUMMARY: processing the following file failed:
'r3Cseq.Rnw'
Error: Vignette re-building failed.
Execution halted