| Back to Build/check report for BioC 3.17: simplified long |
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This page was generated on 2023-03-27 05:50:42 -0000 (Mon, 27 Mar 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-03-12 r83975) -- "Unsuffered Consequences" | 6083 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the rGREAT package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rGREAT.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1681/2195 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| rGREAT 2.1.5 (landing page) Zuguang Gu
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | ERROR | skipped | |||||||||
| Package: rGREAT |
| Version: 2.1.5 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data rGREAT |
| StartedAt: 2023-03-24 15:27:48 -0000 (Fri, 24 Mar 2023) |
| EndedAt: 2023-03-24 15:33:15 -0000 (Fri, 24 Mar 2023) |
| EllapsedTime: 326.4 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data rGREAT ### ############################################################################## ############################################################################## * checking for file ‘rGREAT/DESCRIPTION’ ... OK * preparing ‘rGREAT’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘local-GREAT.Rmd’ using rmarkdown * installing *source* package ‘BioMartGOGeneSets’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BioMartGOGeneSets) --- finished re-building ‘local-GREAT.Rmd’ --- re-building ‘online-GREAT.Rmd’ using rmarkdown Quitting from lines 179-180 (online-GREAT.Rmd) Error: processing vignette 'online-GREAT.Rmd' failed with diagnostics: Empty data, probably your 'termID' is invalid. Please check the URL above. --- failed re-building ‘online-GREAT.Rmd’ --- re-building ‘other-docs.Rmd’ using rmarkdown --- finished re-building ‘other-docs.Rmd’ --- re-building ‘other-geneset-databases.Rmd’ using rmarkdown * installing *source* package ‘UniProtKeywords’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (UniProtKeywords) --- finished re-building ‘other-geneset-databases.Rmd’ --- re-building ‘other-organisms.Rmd’ using rmarkdown --- finished re-building ‘other-organisms.Rmd’ SUMMARY: processing the following file failed: ‘online-GREAT.Rmd’ Error: Vignette re-building failed. Execution halted