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This page was generated on 2023-05-10 10:04:27 -0000 (Wed, 10 May 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-03-12 r83975) -- "Unsuffered Consequences" 6211
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BUILD results for BioMM on kunpeng1


To the developers/maintainers of the BioMM package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BioMM.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 203/2194HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BioMM 1.17.0  (landing page)
Junfang Chen
Snapshot Date: 2023-05-08 19:11:19 -0000 (Mon, 08 May 2023)
git_url: https://git.bioconductor.org/packages/BioMM
git_branch: devel
git_last_commit: 8110b69
git_last_commit_date: 2023-04-25 15:07:55 -0000 (Tue, 25 Apr 2023)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    ERROR  skipped

Summary

Package: BioMM
Version: 1.17.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BioMM
StartedAt: 2023-05-08 23:35:46 -0000 (Mon, 08 May 2023)
EndedAt: 2023-05-08 23:37:08 -0000 (Mon, 08 May 2023)
EllapsedTime: 82.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BioMM
###
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* checking for file ‘BioMM/DESCRIPTION’ ... OK
* preparing ‘BioMM’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘BioMMtutorial.Rmd’ using rmarkdown
Quitting from lines 307-314 (BioMMtutorial.Rmd) 
Error: processing vignette 'BioMMtutorial.Rmd' failed with diagnostics:
BiocParallel errors
  4 remote errors, element index: 1, 14, 27, 40
  45 unevaluated and other errors
  first remote error:
Error in (function (..., row.names = NULL, check.rows = FALSE, check.names = TRUE, : 'row.names' should specify one of the variables

--- failed re-building ‘BioMMtutorial.Rmd’

SUMMARY: processing the following file failed:
  ‘BioMMtutorial.Rmd’

Error: Vignette re-building failed.
Execution halted