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This page was generated on 2023-05-10 10:04:27 -0000 (Wed, 10 May 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-03-12 r83975) -- "Unsuffered Consequences" | 6211 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the CancerInSilico package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CancerInSilico.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 260/2194 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| CancerInSilico 2.21.0 (landing page) Thomas D. Sherman
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | ERROR | ERROR | skipped | |||||||||
| Package: CancerInSilico |
| Version: 2.21.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CancerInSilico |
| StartedAt: 2023-05-08 23:56:23 -0000 (Mon, 08 May 2023) |
| EndedAt: 2023-05-08 23:56:43 -0000 (Mon, 08 May 2023) |
| EllapsedTime: 20.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CancerInSilico
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* checking for file ‘CancerInSilico/DESCRIPTION’ ... OK
* preparing ‘CancerInSilico’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
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* installing *source* package ‘CancerInSilico’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/library/BH/include' -I/usr/local/include -fPIC -g -O2 -c RunModel.cpp -o RunModel.o
In file included from CellModels/../OffLatticeModel/OffLatticeCellBasedModel.h:8,
from CellModels/DrasdoHohmeModel.h:7,
from RunModel.cpp:4:
CellModels/../OffLatticeModel/OffLatticeCell.h: In member function ‘PointPair OffLatticeCell::centers() const’:
CellModels/../OffLatticeModel/OffLatticeCell.h:72:31: note: parameter passing for argument of type ‘std::pair<Point<double>, Point<double> >’ when C++17 is enabled changed to match C++14 in GCC 10.1
72 | PointPair centers() const {return mCenters;}
| ^
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/library/BH/include' -I/usr/local/include -fPIC -g -O2 -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/library/BH/include' -I/usr/local/include -fPIC -g -O2 -c test-runner.cpp -o test-runner.o
In file included from /usr/include/signal.h:328,
from Tests/catch.h:2070,
from test-runner.cpp:2:
Tests/catch.h:6473:33: error: size of array ‘altStackMem’ is not an integral constant-expression
6473 | static char altStackMem[SIGSTKSZ];
| ^~~~~~~~
Tests/catch.h:6524:45: error: size of array ‘altStackMem’ is not an integral constant-expression
6524 | char FatalConditionHandler::altStackMem[SIGSTKSZ] = {};
| ^~~~~~~~
make: *** [/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/etc/Makeconf:198: test-runner.o] Error 1
ERROR: compilation failed for package ‘CancerInSilico’
* removing ‘/tmp/Rtmppl4GDQ/Rinstae33b6a94cdf2/CancerInSilico’
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ERROR: package installation failed