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This page was generated on 2023-05-10 10:04:32 -0000 (Wed, 10 May 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-03-12 r83975) -- "Unsuffered Consequences" 6211
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for GEOmetadb on kunpeng1


To the developers/maintainers of the GEOmetadb package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GEOmetadb.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 807/2194HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GEOmetadb 1.63.0  (landing page)
Jack Zhu
Snapshot Date: 2023-05-08 19:11:19 -0000 (Mon, 08 May 2023)
git_url: https://git.bioconductor.org/packages/GEOmetadb
git_branch: devel
git_last_commit: a7e3243
git_last_commit_date: 2023-04-25 13:46:35 -0000 (Tue, 25 Apr 2023)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    ERROR  skipped

Summary

Package: GEOmetadb
Version: 1.63.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data GEOmetadb
StartedAt: 2023-05-09 02:06:21 -0000 (Tue, 09 May 2023)
EndedAt: 2023-05-09 02:16:59 -0000 (Tue, 09 May 2023)
EllapsedTime: 637.9 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data GEOmetadb
###
##############################################################################
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* checking for file ‘GEOmetadb/DESCRIPTION’ ... OK
* preparing ‘GEOmetadb’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘GEOmetadb.Rmd’ using rmarkdown
trying URL 'https://gbnci.cancer.gov/geo/GEOmetadb_demo.sqlite.gz'
Content type 'application/x-gzip' length 20889492 bytes (19.9 MB)
=================================
downloaded 13.5 MB

Quitting from lines 88-97 (GEOmetadb.Rmd) 
Error: processing vignette 'GEOmetadb.Rmd' failed with diagnostics:
download from 'https://gbnci.cancer.gov/geo/GEOmetadb_demo.sqlite.gz' failed
--- failed re-building ‘GEOmetadb.Rmd’

SUMMARY: processing the following file failed:
  ‘GEOmetadb.Rmd’

Error: Vignette re-building failed.
Execution halted