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This page was generated on 2023-05-10 10:04:33 -0000 (Wed, 10 May 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-03-12 r83975) -- "Unsuffered Consequences" 6211
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for HPAStainR on kunpeng1


To the developers/maintainers of the HPAStainR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPAStainR.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 933/2194HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HPAStainR 1.11.0  (landing page)
Tim O. Nieuwenhuis
Snapshot Date: 2023-05-08 19:11:19 -0000 (Mon, 08 May 2023)
git_url: https://git.bioconductor.org/packages/HPAStainR
git_branch: devel
git_last_commit: c6725d0
git_last_commit_date: 2023-04-25 15:21:33 -0000 (Tue, 25 Apr 2023)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    ERROR  skipped

Summary

Package: HPAStainR
Version: 1.11.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data HPAStainR
StartedAt: 2023-05-09 02:42:59 -0000 (Tue, 09 May 2023)
EndedAt: 2023-05-09 02:43:28 -0000 (Tue, 09 May 2023)
EllapsedTime: 29.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data HPAStainR
###
##############################################################################
##############################################################################


* checking for file ‘HPAStainR/DESCRIPTION’ ... OK
* preparing ‘HPAStainR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘HPAStainR.Rmd’ using rmarkdown
trying URL 'https://www.proteinatlas.org/download/normal_tissue.tsv.zip'
Content type 'application/zip' length 5606031 bytes (5.3 MB)
==================================================
downloaded 5.3 MB

trying URL 'https://www.proteinatlas.org/download/pathology.tsv.zip'
Content type 'application/zip' length 3609172 bytes (3.4 MB)
==================================================
downloaded 3.4 MB

Quitting from lines 89-90 (HPAStainR.Rmd) 
Error: processing vignette 'HPAStainR.Rmd' failed with diagnostics:
object 'hpaNormalTissue' not found
--- failed re-building ‘HPAStainR.Rmd’

SUMMARY: processing the following file failed:
  ‘HPAStainR.Rmd’

Error: Vignette re-building failed.
Execution halted