Back to Build/check report for BioC 3.18: simplified long |
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This page was generated on 2023-05-10 10:04:33 -0000 (Wed, 10 May 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-03-12 r83975) -- "Unsuffered Consequences" | 6211 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
Package 934/2194 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
HPiP 1.7.0 (landing page) Matineh Rahmatbakhsh
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
Package: HPiP |
Version: 1.7.0 |
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings HPiP_1.7.0.tar.gz |
StartedAt: 2023-05-09 18:39:22 -0000 (Tue, 09 May 2023) |
EndedAt: 2023-05-09 18:55:20 -0000 (Tue, 09 May 2023) |
EllapsedTime: 958.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: HPiP.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings HPiP_1.7.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/HPiP.Rcheck’ * using R Under development (unstable) (2023-03-12 r83975) * using platform: aarch64-unknown-linux-gnu (64-bit) * R was compiled by gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 * running under: Ubuntu 22.04.2 LTS * using session charset: UTF-8 * checking for file ‘HPiP/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘HPiP’ version ‘1.7.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘HPiP’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘ftrCOOL’ * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed var_imp 39.069 0.409 39.480 corr_plot 37.351 0.392 37.748 FSmethod 37.190 0.367 37.563 pred_ensembel 18.340 0.321 16.290 getFASTA 0.749 0.013 9.913 enrichfindP 0.426 0.036 14.953 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘runTests.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘HPiP_tutorial.Rmd’ using ‘UTF-8’... OK NONE * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.17-bioc/meat/HPiP.Rcheck/00check.log’ for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library’ * installing *source* package ‘HPiP’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R Under development (unstable) (2023-03-12 r83975) -- "Unsuffered Consequences" Copyright (C) 2023 The R Foundation for Statistical Computing Platform: aarch64-unknown-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage('HPiP') No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE avNNet Loading required package: ggplot2 Loading required package: lattice Fitting Repeat 1 # weights: 103 initial value 100.186346 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 102.579698 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 94.492275 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 98.729223 iter 10 value 92.881635 iter 20 value 86.851096 iter 30 value 86.064237 iter 40 value 86.064021 final value 86.064020 converged Fitting Repeat 5 # weights: 103 initial value 104.470549 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 94.235041 iter 10 value 93.088709 iter 20 value 88.896505 iter 30 value 88.775576 iter 40 value 88.759956 iter 50 value 88.759027 iter 50 value 88.759027 iter 50 value 88.759027 final value 88.759027 converged Fitting Repeat 2 # weights: 305 initial value 95.492012 final value 94.443243 converged Fitting Repeat 3 # weights: 305 initial value 99.784568 final value 94.443243 converged Fitting Repeat 4 # weights: 305 initial value 95.557469 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 102.223763 final value 94.400000 converged Fitting Repeat 1 # weights: 507 initial value 105.916427 iter 10 value 94.443249 final value 94.443243 converged Fitting Repeat 2 # weights: 507 initial value 99.812968 final value 94.443243 converged Fitting Repeat 3 # weights: 507 initial value 107.925437 final value 94.443243 converged Fitting Repeat 4 # weights: 507 initial value 95.747344 final value 94.326054 converged Fitting Repeat 5 # weights: 507 initial value 99.696111 iter 10 value 85.427917 iter 20 value 82.778235 iter 30 value 82.357208 final value 82.356755 converged Fitting Repeat 1 # weights: 103 initial value 97.923849 iter 10 value 94.484702 iter 20 value 88.868012 iter 30 value 87.702059 iter 40 value 86.342183 iter 50 value 85.264385 iter 60 value 84.194694 iter 70 value 83.165289 iter 80 value 82.727727 iter 90 value 82.260936 iter 100 value 81.756239 final value 81.756239 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 98.416652 iter 10 value 94.451856 iter 20 value 84.484623 iter 30 value 83.410574 iter 40 value 83.168926 iter 50 value 83.134957 iter 60 value 83.123459 final value 83.123457 converged Fitting Repeat 3 # weights: 103 initial value 115.190420 iter 10 value 93.532392 iter 20 value 85.751299 iter 30 value 84.044359 iter 40 value 83.648449 iter 50 value 82.732790 iter 60 value 82.437145 iter 70 value 82.382490 final value 82.382463 converged Fitting Repeat 4 # weights: 103 initial value 107.072637 iter 10 value 89.587933 iter 20 value 83.257717 iter 30 value 82.922962 iter 40 value 82.669874 iter 50 value 82.423208 iter 60 value 82.382464 final value 82.382463 converged Fitting Repeat 5 # weights: 103 initial value 114.015116 iter 10 value 94.578183 iter 20 value 94.488719 iter 30 value 84.946308 iter 40 value 82.795603 iter 50 value 82.242491 iter 60 value 81.785239 iter 70 value 81.347242 iter 80 value 81.111243 iter 90 value 81.020290 final value 81.019369 converged Fitting Repeat 1 # weights: 305 initial value 114.576041 iter 10 value 89.665211 iter 20 value 85.711129 iter 30 value 84.894022 iter 40 value 84.272666 iter 50 value 82.612573 iter 60 value 81.652377 iter 70 value 80.592185 iter 80 value 79.928327 iter 90 value 79.711921 iter 100 value 79.464186 final value 79.464186 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 105.265630 iter 10 value 94.496249 iter 20 value 94.421731 iter 30 value 89.827218 iter 40 value 88.127794 iter 50 value 85.086822 iter 60 value 81.064724 iter 70 value 80.503440 iter 80 value 80.259029 iter 90 value 80.213120 iter 100 value 80.203033 final value 80.203033 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 111.152985 iter 10 value 94.351898 iter 20 value 85.179158 iter 30 value 84.314265 iter 40 value 83.697134 iter 50 value 82.792150 iter 60 value 82.587441 iter 70 value 82.405015 iter 80 value 81.741120 iter 90 value 80.215415 iter 100 value 79.596765 final value 79.596765 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 99.596235 iter 10 value 94.508852 iter 20 value 83.375171 iter 30 value 82.876671 iter 40 value 82.633568 iter 50 value 82.564111 iter 60 value 82.407996 iter 70 value 81.054242 iter 80 value 79.838479 iter 90 value 79.701801 iter 100 value 79.659383 final value 79.659383 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 102.417549 iter 10 value 94.722226 iter 20 value 94.333732 iter 30 value 91.663139 iter 40 value 87.188723 iter 50 value 85.169590 iter 60 value 84.006625 iter 70 value 82.608644 iter 80 value 81.661026 iter 90 value 81.243147 iter 100 value 81.174310 final value 81.174310 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 116.942145 iter 10 value 94.718713 iter 20 value 92.301339 iter 30 value 89.911972 iter 40 value 83.126996 iter 50 value 82.029934 iter 60 value 80.604896 iter 70 value 79.639370 iter 80 value 79.440947 iter 90 value 79.223856 iter 100 value 78.940089 final value 78.940089 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 121.728987 iter 10 value 94.899822 iter 20 value 94.499360 iter 30 value 94.010956 iter 40 value 86.471378 iter 50 value 82.190414 iter 60 value 81.797323 iter 70 value 81.384003 iter 80 value 80.050441 iter 90 value 79.354964 iter 100 value 79.136299 final value 79.136299 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 132.113502 iter 10 value 94.965312 iter 20 value 94.400083 iter 30 value 84.418465 iter 40 value 83.807001 iter 50 value 83.340173 iter 60 value 81.899555 iter 70 value 80.844282 iter 80 value 80.115506 iter 90 value 79.889983 iter 100 value 79.436718 final value 79.436718 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 116.339132 iter 10 value 94.703265 iter 20 value 94.424102 iter 30 value 89.985609 iter 40 value 84.317796 iter 50 value 83.826822 iter 60 value 83.311642 iter 70 value 81.422837 iter 80 value 80.077098 iter 90 value 79.793366 iter 100 value 79.473748 final value 79.473748 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 123.919032 iter 10 value 94.824483 iter 20 value 93.815229 iter 30 value 82.974625 iter 40 value 80.945166 iter 50 value 80.449859 iter 60 value 80.043050 iter 70 value 79.423332 iter 80 value 79.072929 iter 90 value 78.917572 iter 100 value 78.791620 final value 78.791620 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 97.860644 final value 94.485905 converged Fitting Repeat 2 # weights: 103 initial value 101.598859 final value 94.485987 converged Fitting Repeat 3 # weights: 103 initial value 97.447595 final value 93.932680 converged Fitting Repeat 4 # weights: 103 initial value 94.951319 iter 10 value 94.485835 iter 20 value 94.394973 iter 30 value 88.064474 iter 40 value 88.030867 iter 50 value 88.026933 iter 60 value 88.023701 iter 70 value 88.015590 iter 80 value 88.013782 iter 90 value 88.010778 iter 100 value 83.297476 final value 83.297476 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 97.751245 final value 94.485720 converged Fitting Repeat 1 # weights: 305 initial value 98.081982 iter 10 value 94.488965 iter 20 value 94.481917 iter 30 value 83.859995 iter 40 value 83.573862 iter 50 value 83.558860 iter 60 value 83.554176 iter 70 value 83.432309 iter 80 value 83.300908 final value 83.300764 converged Fitting Repeat 2 # weights: 305 initial value 102.600748 iter 10 value 94.488873 iter 20 value 94.484282 final value 94.484260 converged Fitting Repeat 3 # weights: 305 initial value 98.737246 iter 10 value 94.488821 iter 20 value 94.436080 iter 30 value 87.055783 iter 40 value 82.950614 iter 50 value 82.946307 iter 60 value 82.945336 final value 82.944907 converged Fitting Repeat 4 # weights: 305 initial value 104.091505 iter 10 value 94.489102 iter 20 value 94.484401 iter 30 value 93.522398 iter 40 value 84.467967 iter 50 value 82.734461 iter 60 value 80.573191 iter 70 value 80.233602 iter 80 value 80.215401 iter 90 value 80.192977 iter 90 value 80.192977 final value 80.192977 converged Fitting Repeat 5 # weights: 305 initial value 98.302674 iter 10 value 94.447810 iter 20 value 94.265683 iter 30 value 85.992310 iter 40 value 85.854276 iter 50 value 85.400899 iter 60 value 84.748474 iter 70 value 81.328255 iter 80 value 79.920772 iter 90 value 79.523186 iter 100 value 79.518082 final value 79.518082 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 98.437713 iter 10 value 93.272725 iter 20 value 92.860855 iter 30 value 91.876907 iter 40 value 91.597035 iter 50 value 90.898941 iter 60 value 90.874814 final value 90.874641 converged Fitting Repeat 2 # weights: 507 initial value 114.606614 iter 10 value 94.491361 iter 20 value 91.745845 iter 30 value 83.556768 iter 40 value 83.554329 iter 50 value 83.527156 iter 60 value 83.523157 iter 60 value 83.523157 final value 83.523157 converged Fitting Repeat 3 # weights: 507 initial value 108.486263 iter 10 value 94.445722 iter 20 value 94.258404 iter 30 value 91.882342 iter 40 value 91.573363 final value 91.562970 converged Fitting Repeat 4 # weights: 507 initial value 119.309548 iter 10 value 94.451421 iter 20 value 94.444723 iter 30 value 89.219527 iter 40 value 83.896149 iter 50 value 83.146093 iter 60 value 83.054553 final value 83.054525 converged Fitting Repeat 5 # weights: 507 initial value 99.873483 iter 10 value 94.489576 iter 20 value 90.191925 iter 30 value 89.795319 iter 40 value 89.766656 iter 50 value 83.571121 iter 60 value 83.562365 iter 70 value 83.457230 iter 80 value 83.393997 iter 90 value 83.379121 iter 100 value 82.831761 final value 82.831761 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 97.423455 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 96.810681 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 99.006931 iter 10 value 94.484217 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 113.324503 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 95.276751 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 99.136169 iter 10 value 94.212061 final value 94.147058 converged Fitting Repeat 2 # weights: 305 initial value 96.980638 final value 94.449438 converged Fitting Repeat 3 # weights: 305 initial value 97.522785 final value 94.484211 converged Fitting Repeat 4 # weights: 305 initial value 102.099804 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 116.705526 final value 94.354396 converged Fitting Repeat 1 # weights: 507 initial value 95.292780 final value 94.484211 converged Fitting Repeat 2 # weights: 507 initial value 95.218816 final value 94.484211 converged Fitting Repeat 3 # weights: 507 initial value 95.085469 final value 94.354396 converged Fitting Repeat 4 # weights: 507 initial value 105.469380 final value 94.484211 converged Fitting Repeat 5 # weights: 507 initial value 98.928422 final value 94.453333 converged Fitting Repeat 1 # weights: 103 initial value 102.691315 iter 10 value 93.904378 iter 20 value 91.796534 iter 30 value 91.667082 iter 40 value 91.637609 iter 50 value 91.611107 iter 60 value 91.599473 final value 91.599467 converged Fitting Repeat 2 # weights: 103 initial value 99.549512 iter 10 value 94.522593 iter 20 value 93.914445 iter 30 value 89.168591 iter 40 value 87.141239 iter 50 value 86.339157 iter 60 value 85.167094 iter 70 value 84.442320 iter 80 value 84.288004 iter 90 value 83.747382 iter 100 value 83.626169 final value 83.626169 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 96.476079 iter 10 value 93.604203 iter 20 value 87.991504 iter 30 value 86.837282 iter 40 value 86.514276 iter 50 value 86.409368 iter 60 value 86.276057 iter 70 value 86.098888 iter 80 value 86.097976 iter 80 value 86.097975 iter 80 value 86.097975 final value 86.097975 converged Fitting Repeat 4 # weights: 103 initial value 97.182984 iter 10 value 94.486872 iter 20 value 93.862822 iter 30 value 89.655268 iter 40 value 88.015539 iter 50 value 86.825309 iter 60 value 85.799325 iter 70 value 84.895903 iter 80 value 84.673988 iter 90 value 84.533127 iter 100 value 83.948918 final value 83.948918 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 102.025972 iter 10 value 94.488580 iter 20 value 93.232309 iter 30 value 90.133971 iter 40 value 86.943336 iter 50 value 86.061990 iter 60 value 85.873030 iter 70 value 83.986236 iter 80 value 83.940106 iter 90 value 83.906762 iter 100 value 83.882390 final value 83.882390 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 103.964708 iter 10 value 94.718021 iter 20 value 87.777687 iter 30 value 86.896992 iter 40 value 86.710748 iter 50 value 86.506364 iter 60 value 86.448236 iter 70 value 86.347164 iter 80 value 85.431000 iter 90 value 85.100802 iter 100 value 85.028596 final value 85.028596 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 103.680262 iter 10 value 94.380324 iter 20 value 91.231685 iter 30 value 90.035768 iter 40 value 89.231270 iter 50 value 87.824728 iter 60 value 85.836288 iter 70 value 83.441009 iter 80 value 83.098685 iter 90 value 82.722220 iter 100 value 82.695404 final value 82.695404 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 100.009082 iter 10 value 94.608774 iter 20 value 92.080986 iter 30 value 88.890241 iter 40 value 88.262021 iter 50 value 86.138148 iter 60 value 84.380050 iter 70 value 83.842082 iter 80 value 83.668668 iter 90 value 83.120808 iter 100 value 82.838590 final value 82.838590 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 99.709168 iter 10 value 94.358717 iter 20 value 91.986297 iter 30 value 88.749307 iter 40 value 84.994528 iter 50 value 84.856445 iter 60 value 84.701460 iter 70 value 84.414438 iter 80 value 84.055705 iter 90 value 83.864005 iter 100 value 83.821565 final value 83.821565 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 124.071125 iter 10 value 94.032504 iter 20 value 90.473382 iter 30 value 88.669213 iter 40 value 87.514531 iter 50 value 86.077814 iter 60 value 85.458946 iter 70 value 85.075243 iter 80 value 84.019913 iter 90 value 83.809940 iter 100 value 83.512608 final value 83.512608 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 119.314469 iter 10 value 94.793753 iter 20 value 86.366528 iter 30 value 83.759413 iter 40 value 83.470666 iter 50 value 82.992955 iter 60 value 82.746296 iter 70 value 82.594284 iter 80 value 82.422221 iter 90 value 82.294907 iter 100 value 82.240204 final value 82.240204 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 117.165680 iter 10 value 94.587971 iter 20 value 93.141286 iter 30 value 92.183870 iter 40 value 88.466895 iter 50 value 85.948371 iter 60 value 84.350542 iter 70 value 83.823468 iter 80 value 83.263344 iter 90 value 83.041653 iter 100 value 82.951501 final value 82.951501 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 112.830125 iter 10 value 94.679949 iter 20 value 94.600932 iter 30 value 90.716000 iter 40 value 85.591111 iter 50 value 84.615342 iter 60 value 84.361571 iter 70 value 84.171812 iter 80 value 84.125657 iter 90 value 83.684717 iter 100 value 83.318945 final value 83.318945 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 107.729741 iter 10 value 94.675751 iter 20 value 94.500289 iter 30 value 89.460040 iter 40 value 89.209752 iter 50 value 88.315065 iter 60 value 87.531382 iter 70 value 86.519053 iter 80 value 85.970994 iter 90 value 85.885542 iter 100 value 85.358996 final value 85.358996 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 126.896146 iter 10 value 94.469007 iter 20 value 88.688423 iter 30 value 87.778780 iter 40 value 85.809786 iter 50 value 84.920500 iter 60 value 84.636896 iter 70 value 84.507107 iter 80 value 84.028472 iter 90 value 83.616749 iter 100 value 83.561049 final value 83.561049 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 104.474443 final value 94.485775 converged Fitting Repeat 2 # weights: 103 initial value 107.820931 iter 10 value 94.486000 iter 20 value 94.098871 iter 30 value 88.953053 iter 40 value 88.890415 iter 50 value 88.054779 iter 60 value 87.972022 iter 70 value 87.971913 iter 80 value 87.860301 iter 90 value 87.057523 iter 100 value 86.437489 final value 86.437489 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 100.865082 final value 94.485667 converged Fitting Repeat 4 # weights: 103 initial value 98.471587 final value 94.488181 converged Fitting Repeat 5 # weights: 103 initial value 95.864923 iter 10 value 94.356067 iter 20 value 93.683805 iter 30 value 88.153767 final value 88.079774 converged Fitting Repeat 1 # weights: 305 initial value 101.530461 iter 10 value 94.488547 iter 20 value 94.454526 iter 30 value 94.354454 iter 30 value 94.354454 iter 30 value 94.354454 final value 94.354454 converged Fitting Repeat 2 # weights: 305 initial value 104.295253 iter 10 value 94.487986 iter 20 value 94.456950 iter 30 value 93.662179 iter 40 value 93.661634 final value 93.661624 converged Fitting Repeat 3 # weights: 305 initial value 97.339999 iter 10 value 94.488829 iter 20 value 94.480321 iter 30 value 94.385915 iter 40 value 92.260006 iter 50 value 90.592247 iter 60 value 90.591412 final value 90.591358 converged Fitting Repeat 4 # weights: 305 initial value 95.112035 iter 10 value 94.488593 iter 20 value 94.258555 iter 30 value 92.949741 iter 40 value 91.330579 iter 50 value 91.245572 iter 60 value 91.216132 iter 70 value 91.215984 final value 91.215977 converged Fitting Repeat 5 # weights: 305 initial value 106.247200 iter 10 value 94.316857 iter 20 value 94.310968 final value 94.308555 converged Fitting Repeat 1 # weights: 507 initial value 104.975609 iter 10 value 94.492432 iter 20 value 94.395429 iter 30 value 88.583024 iter 40 value 86.491463 iter 50 value 86.308268 iter 60 value 83.794698 iter 70 value 83.075015 iter 80 value 82.984333 iter 90 value 82.835172 iter 100 value 82.826663 final value 82.826663 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 115.022584 iter 10 value 94.492051 iter 20 value 94.481144 iter 30 value 93.876248 iter 40 value 88.379450 iter 50 value 88.026598 iter 60 value 85.929929 iter 70 value 85.605036 iter 80 value 85.571235 iter 90 value 85.535361 iter 100 value 85.535112 final value 85.535112 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 103.404541 iter 10 value 94.491423 iter 20 value 92.766812 iter 30 value 92.607603 iter 40 value 91.596389 iter 50 value 91.406241 final value 91.342538 converged Fitting Repeat 4 # weights: 507 initial value 106.795406 iter 10 value 94.493245 iter 20 value 94.171741 iter 30 value 88.818384 iter 40 value 88.817226 iter 50 value 88.765218 iter 60 value 87.835731 iter 70 value 86.779522 iter 80 value 86.779112 iter 90 value 86.768864 iter 100 value 86.755785 final value 86.755785 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 94.901060 iter 10 value 94.362249 iter 20 value 94.333130 iter 30 value 94.308472 iter 40 value 94.304573 final value 94.304492 converged Fitting Repeat 1 # weights: 103 initial value 108.279044 final value 94.052910 converged Fitting Repeat 2 # weights: 103 initial value 101.236015 final value 94.052910 converged Fitting Repeat 3 # weights: 103 initial value 94.084514 final value 94.032967 converged Fitting Repeat 4 # weights: 103 initial value 113.873696 final value 94.052910 converged Fitting Repeat 5 # weights: 103 initial value 94.403829 final value 94.052910 converged Fitting Repeat 1 # weights: 305 initial value 102.082873 final value 93.008964 converged Fitting Repeat 2 # weights: 305 initial value 103.235594 final value 94.032967 converged Fitting Repeat 3 # weights: 305 initial value 115.169094 final value 94.052910 converged Fitting Repeat 4 # weights: 305 initial value 107.987487 final value 94.052910 converged Fitting Repeat 5 # weights: 305 initial value 96.097353 final value 94.032967 converged Fitting Repeat 1 # weights: 507 initial value 105.047079 final value 93.356643 converged Fitting Repeat 2 # weights: 507 initial value 95.327804 iter 10 value 91.736482 iter 20 value 91.732288 final value 91.732281 converged Fitting Repeat 3 # weights: 507 initial value 100.148759 final value 93.455030 converged Fitting Repeat 4 # weights: 507 initial value 105.536893 final value 94.052910 converged Fitting Repeat 5 # weights: 507 initial value 96.595040 final value 94.052910 converged Fitting Repeat 1 # weights: 103 initial value 103.445802 iter 10 value 94.016990 iter 20 value 92.964179 iter 30 value 92.929553 iter 40 value 92.894489 iter 50 value 92.019512 iter 60 value 86.768371 iter 70 value 83.361402 iter 80 value 82.588598 iter 90 value 82.267869 iter 100 value 81.729953 final value 81.729953 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 99.058687 iter 10 value 94.054394 iter 20 value 92.986507 iter 30 value 92.915548 iter 40 value 92.768900 iter 50 value 92.716761 iter 60 value 87.737406 iter 70 value 86.012167 iter 80 value 83.366073 iter 90 value 82.282732 iter 100 value 81.619799 final value 81.619799 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 112.351903 iter 10 value 93.403001 iter 20 value 92.765556 iter 30 value 89.957269 iter 40 value 85.939005 iter 50 value 83.787606 iter 60 value 83.493253 iter 70 value 83.079796 iter 80 value 82.054724 iter 90 value 81.626907 iter 100 value 81.225010 final value 81.225010 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 111.878531 iter 10 value 94.028944 iter 20 value 93.571768 iter 30 value 93.438770 iter 40 value 90.465810 iter 50 value 84.943562 iter 60 value 82.396191 iter 70 value 81.933191 iter 80 value 81.116218 iter 90 value 80.963302 iter 100 value 80.795902 final value 80.795902 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 101.925103 iter 10 value 93.813064 iter 20 value 93.063351 iter 30 value 91.349127 iter 40 value 86.950551 iter 50 value 83.542208 iter 60 value 82.144690 iter 70 value 82.057540 iter 80 value 81.993152 iter 90 value 81.559560 iter 100 value 81.137981 final value 81.137981 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 102.220715 iter 10 value 94.207354 iter 20 value 94.035558 iter 30 value 88.590140 iter 40 value 86.319391 iter 50 value 85.352996 iter 60 value 85.102604 iter 70 value 84.997359 iter 80 value 83.463822 iter 90 value 81.534083 iter 100 value 80.221811 final value 80.221811 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 108.357392 iter 10 value 93.667731 iter 20 value 89.230685 iter 30 value 86.796483 iter 40 value 86.377818 iter 50 value 84.690365 iter 60 value 84.052477 iter 70 value 81.115573 iter 80 value 79.773184 iter 90 value 79.044069 iter 100 value 78.774317 final value 78.774317 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 140.754588 iter 10 value 100.468482 iter 20 value 94.121342 iter 30 value 87.756438 iter 40 value 84.774025 iter 50 value 84.152344 iter 60 value 84.026498 iter 70 value 83.943431 iter 80 value 83.665220 iter 90 value 83.618891 iter 100 value 83.408295 final value 83.408295 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 102.917864 iter 10 value 93.888709 iter 20 value 92.934014 iter 30 value 86.085275 iter 40 value 85.146933 iter 50 value 83.169261 iter 60 value 82.017211 iter 70 value 81.427021 iter 80 value 80.906689 iter 90 value 80.317523 iter 100 value 79.580204 final value 79.580204 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 111.235326 iter 10 value 94.106927 iter 20 value 93.909297 iter 30 value 88.199955 iter 40 value 85.542838 iter 50 value 85.412405 iter 60 value 82.282053 iter 70 value 79.868341 iter 80 value 79.044293 iter 90 value 78.860351 iter 100 value 78.737038 final value 78.737038 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 106.409447 iter 10 value 93.940154 iter 20 value 91.525793 iter 30 value 86.497283 iter 40 value 83.962393 iter 50 value 83.645647 iter 60 value 81.968750 iter 70 value 80.701482 iter 80 value 80.339862 iter 90 value 80.213391 iter 100 value 79.824389 final value 79.824389 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 124.638023 iter 10 value 93.836619 iter 20 value 85.754883 iter 30 value 82.988711 iter 40 value 81.977246 iter 50 value 81.528735 iter 60 value 79.810706 iter 70 value 78.935737 iter 80 value 78.864838 iter 90 value 78.772572 iter 100 value 78.730262 final value 78.730262 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 108.382477 iter 10 value 94.085060 iter 20 value 86.607365 iter 30 value 84.953411 iter 40 value 83.507513 iter 50 value 82.151942 iter 60 value 80.848189 iter 70 value 79.608394 iter 80 value 79.251106 iter 90 value 79.203220 iter 100 value 79.189176 final value 79.189176 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 110.497431 iter 10 value 93.229136 iter 20 value 83.822696 iter 30 value 81.649233 iter 40 value 80.194484 iter 50 value 79.599527 iter 60 value 79.426443 iter 70 value 79.287003 iter 80 value 79.256292 iter 90 value 79.204466 iter 100 value 78.952067 final value 78.952067 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 125.057441 iter 10 value 94.382745 iter 20 value 94.075826 iter 30 value 93.783340 iter 40 value 89.413428 iter 50 value 87.595176 iter 60 value 84.557392 iter 70 value 82.704355 iter 80 value 81.310547 iter 90 value 80.387796 iter 100 value 80.180660 final value 80.180660 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 94.959577 final value 94.054541 converged Fitting Repeat 2 # weights: 103 initial value 94.384385 final value 94.054398 converged Fitting Repeat 3 # weights: 103 initial value 109.056693 final value 94.054594 converged Fitting Repeat 4 # weights: 103 initial value 96.667046 final value 94.054361 converged Fitting Repeat 5 # weights: 103 initial value 97.068643 iter 10 value 93.978274 iter 20 value 93.977188 iter 30 value 93.340077 final value 93.337652 converged Fitting Repeat 1 # weights: 305 initial value 95.607188 iter 10 value 94.038040 iter 20 value 94.033247 iter 30 value 89.149199 iter 40 value 83.967359 iter 50 value 83.952417 iter 60 value 83.817318 final value 83.816859 converged Fitting Repeat 2 # weights: 305 initial value 100.444740 iter 10 value 90.901734 iter 20 value 83.871422 iter 30 value 80.193488 iter 40 value 79.187669 iter 50 value 78.820196 iter 60 value 78.817579 iter 70 value 78.815088 iter 80 value 78.810413 iter 90 value 78.806653 iter 100 value 78.750490 final value 78.750490 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 101.400555 iter 10 value 94.066082 iter 20 value 94.058684 iter 30 value 92.839578 iter 40 value 92.837235 iter 50 value 92.835188 iter 60 value 92.803892 iter 70 value 83.576937 iter 80 value 83.549463 iter 90 value 83.540313 iter 100 value 83.538688 final value 83.538688 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 94.639360 iter 10 value 92.608430 iter 20 value 92.606763 iter 30 value 92.602209 iter 40 value 92.530260 iter 50 value 88.061735 iter 60 value 87.983664 iter 70 value 85.849755 final value 85.847261 converged Fitting Repeat 5 # weights: 305 initial value 106.391885 iter 10 value 92.836073 iter 20 value 92.831752 iter 30 value 92.684692 iter 40 value 82.947427 iter 50 value 82.167181 iter 60 value 82.081476 iter 70 value 81.926474 iter 80 value 81.901611 iter 90 value 81.901492 iter 100 value 81.899620 final value 81.899620 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 121.004499 iter 10 value 94.040405 iter 20 value 93.503117 iter 30 value 91.666781 iter 40 value 82.784879 iter 50 value 81.425733 iter 60 value 81.192165 iter 70 value 79.602783 iter 80 value 78.623020 iter 90 value 78.512702 iter 100 value 78.510734 final value 78.510734 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 96.446071 iter 10 value 87.234302 iter 20 value 84.095333 iter 30 value 84.087347 iter 40 value 84.083116 iter 50 value 83.937498 iter 60 value 82.906419 iter 70 value 79.649407 iter 80 value 79.160941 iter 90 value 78.478345 iter 100 value 78.462675 final value 78.462675 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 95.488386 iter 10 value 94.060354 iter 20 value 91.770983 iter 30 value 83.738725 iter 40 value 83.419811 iter 50 value 83.214495 iter 60 value 83.137017 iter 70 value 83.134641 iter 80 value 83.132643 iter 90 value 83.131952 iter 100 value 83.066697 final value 83.066697 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 112.326542 iter 10 value 93.675857 iter 20 value 92.152026 iter 30 value 86.263370 iter 40 value 85.333256 iter 50 value 85.328645 iter 60 value 83.715889 iter 70 value 83.715216 iter 80 value 83.707657 iter 90 value 83.662268 iter 100 value 83.568075 final value 83.568075 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 97.988894 iter 10 value 93.711760 iter 20 value 93.308952 iter 30 value 93.304961 iter 40 value 91.394221 iter 50 value 83.991766 iter 60 value 83.743880 iter 70 value 83.706965 final value 83.706961 converged Fitting Repeat 1 # weights: 103 initial value 107.760922 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 106.409829 iter 10 value 94.307552 iter 20 value 94.304611 final value 94.304609 converged Fitting Repeat 3 # weights: 103 initial value 95.331334 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 98.696813 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 97.672507 iter 10 value 88.590642 final value 88.580617 converged Fitting Repeat 1 # weights: 305 initial value 101.245927 final value 94.484211 converged Fitting Repeat 2 # weights: 305 initial value 104.070636 final value 94.466823 converged Fitting Repeat 3 # weights: 305 initial value 97.577616 final value 94.484211 converged Fitting Repeat 4 # weights: 305 initial value 151.024024 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 106.374470 final value 94.046703 converged Fitting Repeat 1 # weights: 507 initial value 107.462577 final value 94.484211 converged Fitting Repeat 2 # weights: 507 initial value 95.035162 final value 94.484211 converged Fitting Repeat 3 # weights: 507 initial value 98.501635 iter 10 value 92.159721 iter 20 value 91.683410 iter 30 value 91.673403 final value 91.673078 converged Fitting Repeat 4 # weights: 507 initial value 96.999601 iter 10 value 94.466667 iter 10 value 94.466667 iter 10 value 94.466667 final value 94.466667 converged Fitting Repeat 5 # weights: 507 initial value 106.344362 final value 94.466823 converged Fitting Repeat 1 # weights: 103 initial value 101.833671 iter 10 value 94.468428 iter 20 value 92.503253 iter 30 value 85.603173 iter 40 value 85.490873 iter 50 value 84.913837 iter 60 value 84.591048 iter 70 value 84.414589 iter 80 value 84.392263 final value 84.392216 converged Fitting Repeat 2 # weights: 103 initial value 103.645851 iter 10 value 94.307999 iter 20 value 90.302918 iter 30 value 88.046401 iter 40 value 87.403605 iter 50 value 86.082448 iter 60 value 85.552880 iter 70 value 85.036359 iter 80 value 83.151357 iter 90 value 83.072102 final value 83.072067 converged Fitting Repeat 3 # weights: 103 initial value 113.722302 iter 10 value 94.489284 iter 20 value 94.059084 iter 30 value 87.209958 iter 40 value 86.046937 iter 50 value 85.249456 iter 60 value 84.206536 iter 70 value 83.788010 iter 80 value 83.381172 final value 83.380175 converged Fitting Repeat 4 # weights: 103 initial value 107.781975 iter 10 value 94.486562 iter 20 value 94.409636 iter 30 value 89.901343 iter 40 value 89.636145 iter 50 value 87.579180 iter 60 value 86.296858 iter 70 value 84.194523 iter 80 value 83.435092 iter 90 value 83.129657 iter 100 value 83.072070 final value 83.072070 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 102.502746 iter 10 value 94.298165 iter 20 value 87.443156 iter 30 value 85.914498 iter 40 value 85.380495 iter 50 value 85.235497 iter 60 value 85.108371 iter 70 value 84.919598 iter 80 value 84.871861 final value 84.870327 converged Fitting Repeat 1 # weights: 305 initial value 102.829072 iter 10 value 94.222667 iter 20 value 88.736816 iter 30 value 86.141634 iter 40 value 85.246436 iter 50 value 85.020450 iter 60 value 84.872932 iter 70 value 84.611592 iter 80 value 84.578787 iter 90 value 84.211651 iter 100 value 82.858627 final value 82.858627 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 106.208350 iter 10 value 94.546774 iter 20 value 93.848058 iter 30 value 90.103613 iter 40 value 89.434628 iter 50 value 86.663903 iter 60 value 84.660926 iter 70 value 84.277663 iter 80 value 84.032030 iter 90 value 83.544137 iter 100 value 82.894117 final value 82.894117 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 99.410713 iter 10 value 85.972371 iter 20 value 85.429820 iter 30 value 84.267834 iter 40 value 83.786540 iter 50 value 83.125813 iter 60 value 82.379567 iter 70 value 81.859220 iter 80 value 81.733112 iter 90 value 81.693374 iter 100 value 81.657703 final value 81.657703 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 105.038200 iter 10 value 94.522380 iter 20 value 94.304541 iter 30 value 89.206137 iter 40 value 87.752409 iter 50 value 87.332101 iter 60 value 85.610719 iter 70 value 82.424887 iter 80 value 81.959150 iter 90 value 81.826293 iter 100 value 81.695225 final value 81.695225 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 109.055625 iter 10 value 94.456993 iter 20 value 89.888384 iter 30 value 86.928820 iter 40 value 86.059973 iter 50 value 85.151093 iter 60 value 84.208488 iter 70 value 84.164006 iter 80 value 84.093515 iter 90 value 83.637689 iter 100 value 82.086007 final value 82.086007 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 107.839757 iter 10 value 94.795175 iter 20 value 94.453526 iter 30 value 89.780296 iter 40 value 87.630846 iter 50 value 83.911377 iter 60 value 82.622976 iter 70 value 82.223644 iter 80 value 82.071480 iter 90 value 81.956018 iter 100 value 81.650307 final value 81.650307 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 110.485575 iter 10 value 96.133487 iter 20 value 95.347324 iter 30 value 85.965344 iter 40 value 85.531648 iter 50 value 84.710469 iter 60 value 82.824067 iter 70 value 82.189762 iter 80 value 82.086627 iter 90 value 81.729664 iter 100 value 81.656271 final value 81.656271 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 119.825848 iter 10 value 94.694845 iter 20 value 92.158918 iter 30 value 89.886538 iter 40 value 88.616774 iter 50 value 84.792353 iter 60 value 83.398039 iter 70 value 82.416044 iter 80 value 82.152691 iter 90 value 81.932672 iter 100 value 81.675074 final value 81.675074 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 124.402581 iter 10 value 94.466472 iter 20 value 92.275608 iter 30 value 89.913978 iter 40 value 89.119277 iter 50 value 88.957918 iter 60 value 88.729025 iter 70 value 86.860030 iter 80 value 85.532738 iter 90 value 83.086643 iter 100 value 82.881536 final value 82.881536 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 111.597044 iter 10 value 94.785046 iter 20 value 94.490343 iter 30 value 94.488773 iter 40 value 94.441490 iter 50 value 92.962492 iter 60 value 89.482302 iter 70 value 88.148692 iter 80 value 86.327723 iter 90 value 85.493080 iter 100 value 84.395393 final value 84.395393 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 102.228055 iter 10 value 94.485884 final value 94.484215 converged Fitting Repeat 2 # weights: 103 initial value 99.779799 final value 94.485892 converged Fitting Repeat 3 # weights: 103 initial value 97.549521 final value 94.485958 converged Fitting Repeat 4 # weights: 103 initial value 100.875229 iter 10 value 94.486005 final value 94.484219 converged Fitting Repeat 5 # weights: 103 initial value 95.759171 final value 94.486019 converged Fitting Repeat 1 # weights: 305 initial value 94.591608 iter 10 value 94.488956 iter 20 value 94.447154 iter 30 value 88.638144 iter 40 value 87.156079 iter 50 value 81.446880 iter 60 value 80.373082 iter 70 value 80.370175 iter 80 value 80.369588 final value 80.369385 converged Fitting Repeat 2 # weights: 305 initial value 101.410147 iter 10 value 94.052312 iter 20 value 93.363726 iter 30 value 88.741549 iter 40 value 88.598410 iter 50 value 88.583725 final value 88.583673 converged Fitting Repeat 3 # weights: 305 initial value 113.894555 iter 10 value 94.471661 iter 20 value 94.468758 iter 20 value 94.468758 iter 20 value 94.468758 final value 94.468758 converged Fitting Repeat 4 # weights: 305 initial value 108.276551 iter 10 value 94.488945 iter 20 value 94.484232 final value 94.484227 converged Fitting Repeat 5 # weights: 305 initial value 117.129444 iter 10 value 94.488695 iter 20 value 94.484452 iter 30 value 91.450500 iter 40 value 87.374354 iter 50 value 87.292840 iter 60 value 87.292569 iter 70 value 87.283562 iter 80 value 86.685682 iter 90 value 80.851616 iter 100 value 80.275669 final value 80.275669 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 95.654370 iter 10 value 94.492666 iter 20 value 94.161632 iter 30 value 88.822196 iter 40 value 88.742089 iter 50 value 86.867431 iter 60 value 86.838729 iter 70 value 86.210219 iter 80 value 83.718399 iter 90 value 83.691645 iter 100 value 83.688948 final value 83.688948 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 103.693421 iter 10 value 94.392120 iter 20 value 85.016303 iter 30 value 84.727485 iter 40 value 83.776574 final value 83.776482 converged Fitting Repeat 3 # weights: 507 initial value 96.558563 iter 10 value 94.475156 iter 20 value 94.471148 iter 30 value 94.470225 iter 40 value 94.182743 iter 50 value 89.802644 iter 60 value 88.021788 iter 70 value 84.277920 iter 80 value 81.077840 iter 90 value 80.950771 iter 100 value 80.548395 final value 80.548395 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 109.941880 iter 10 value 94.492436 iter 20 value 94.458997 iter 30 value 93.944399 iter 40 value 90.449236 iter 50 value 90.356803 iter 60 value 90.356506 iter 70 value 90.111406 iter 80 value 89.864035 iter 90 value 89.862808 iter 100 value 89.862541 final value 89.862541 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 123.690497 iter 10 value 94.475657 iter 20 value 94.471198 iter 30 value 94.440527 iter 40 value 87.527072 iter 50 value 85.740661 iter 60 value 83.779151 iter 70 value 81.016614 iter 80 value 80.305919 iter 90 value 80.202173 iter 100 value 80.073264 final value 80.073264 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 98.486513 iter 10 value 92.646020 iter 20 value 83.509838 iter 30 value 83.412102 iter 40 value 82.474469 final value 82.461043 converged Fitting Repeat 2 # weights: 103 initial value 123.494438 final value 94.052910 converged Fitting Repeat 3 # weights: 103 initial value 99.469820 final value 94.052910 converged Fitting Repeat 4 # weights: 103 initial value 99.109008 final value 94.052910 converged Fitting Repeat 5 # weights: 103 initial value 96.182690 final value 92.211111 converged Fitting Repeat 1 # weights: 305 initial value 96.268318 final value 94.052910 converged Fitting Repeat 2 # weights: 305 initial value 98.929963 iter 10 value 93.328267 final value 93.328261 converged Fitting Repeat 3 # weights: 305 initial value 98.870827 iter 10 value 93.328281 final value 93.328261 converged Fitting Repeat 4 # weights: 305 initial value 96.186993 iter 10 value 92.211121 final value 92.211111 converged Fitting Repeat 5 # weights: 305 initial value 104.145624 iter 10 value 93.809177 iter 20 value 93.804885 final value 93.804878 converged Fitting Repeat 1 # weights: 507 initial value 102.690892 final value 94.052910 converged Fitting Repeat 2 # weights: 507 initial value 108.001044 final value 94.052910 converged Fitting Repeat 3 # weights: 507 initial value 94.488084 iter 10 value 93.048077 iter 20 value 88.804750 iter 30 value 82.752459 iter 40 value 82.740245 iter 50 value 82.717918 iter 60 value 82.715109 iter 60 value 82.715109 iter 60 value 82.715109 final value 82.715109 converged Fitting Repeat 4 # weights: 507 initial value 109.587940 final value 94.052910 converged Fitting Repeat 5 # weights: 507 initial value 99.393609 iter 10 value 91.666797 final value 91.666671 converged Fitting Repeat 1 # weights: 103 initial value 96.865542 iter 10 value 94.108058 iter 20 value 85.191474 iter 30 value 83.307401 iter 40 value 82.088988 iter 50 value 79.164867 iter 60 value 78.219921 iter 70 value 78.021300 iter 80 value 77.685861 iter 90 value 77.560021 final value 77.559995 converged Fitting Repeat 2 # weights: 103 initial value 98.538447 iter 10 value 93.893292 iter 20 value 83.575339 iter 30 value 82.569121 iter 40 value 81.396188 iter 50 value 81.231520 iter 60 value 81.182336 iter 70 value 81.169001 final value 81.169001 converged Fitting Repeat 3 # weights: 103 initial value 99.801690 iter 10 value 94.047622 iter 20 value 83.257654 iter 30 value 82.437227 iter 40 value 81.653654 iter 50 value 81.612605 iter 60 value 81.595427 final value 81.593652 converged Fitting Repeat 4 # weights: 103 initial value 98.407648 iter 10 value 93.953337 iter 20 value 93.537070 iter 30 value 93.009503 iter 40 value 90.463813 iter 50 value 88.142775 iter 60 value 87.964621 iter 70 value 86.685070 iter 80 value 82.189122 iter 90 value 81.626853 iter 100 value 81.443508 final value 81.443508 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 103.681503 iter 10 value 94.597851 iter 20 value 93.719199 iter 30 value 88.460949 iter 40 value 82.699749 iter 50 value 82.370452 iter 60 value 81.604266 iter 70 value 81.027447 iter 80 value 81.020998 final value 81.020902 converged Fitting Repeat 1 # weights: 305 initial value 131.567487 iter 10 value 94.618267 iter 20 value 91.609316 iter 30 value 85.093449 iter 40 value 84.344995 iter 50 value 83.255758 iter 60 value 78.894551 iter 70 value 77.515633 iter 80 value 77.254243 iter 90 value 76.934233 iter 100 value 76.768143 final value 76.768143 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 113.482707 iter 10 value 94.100506 iter 20 value 93.936416 iter 30 value 93.187369 iter 40 value 88.466494 iter 50 value 80.540121 iter 60 value 78.158470 iter 70 value 76.720616 iter 80 value 76.249367 iter 90 value 76.177273 iter 100 value 76.089895 final value 76.089895 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 104.400771 iter 10 value 94.045108 iter 20 value 88.837813 iter 30 value 82.736741 iter 40 value 81.851851 iter 50 value 79.747708 iter 60 value 78.336906 iter 70 value 77.867410 iter 80 value 77.808830 iter 90 value 77.792796 final value 77.792790 converged Fitting Repeat 4 # weights: 305 initial value 100.460334 iter 10 value 94.090560 iter 20 value 93.919306 iter 30 value 87.718860 iter 40 value 85.551107 iter 50 value 82.535670 iter 60 value 81.544531 iter 70 value 81.471974 iter 80 value 80.851669 iter 90 value 79.399625 iter 100 value 79.250171 final value 79.250171 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 100.927151 iter 10 value 94.011311 iter 20 value 82.979031 iter 30 value 79.629343 iter 40 value 78.535911 iter 50 value 78.154214 iter 60 value 77.741083 iter 70 value 77.457994 iter 80 value 77.448474 iter 90 value 77.438263 iter 100 value 77.348984 final value 77.348984 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 112.249519 iter 10 value 94.309276 iter 20 value 88.178812 iter 30 value 84.072156 iter 40 value 81.697037 iter 50 value 81.022890 iter 60 value 78.898503 iter 70 value 77.520967 iter 80 value 76.739731 iter 90 value 76.477553 iter 100 value 76.415162 final value 76.415162 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 102.957356 iter 10 value 90.950097 iter 20 value 84.202439 iter 30 value 83.365042 iter 40 value 82.015003 iter 50 value 80.904435 iter 60 value 80.314215 iter 70 value 79.750962 iter 80 value 78.786709 iter 90 value 78.310383 iter 100 value 77.718621 final value 77.718621 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 103.289166 iter 10 value 96.158193 iter 20 value 88.810495 iter 30 value 83.675489 iter 40 value 80.446896 iter 50 value 78.406465 iter 60 value 77.287992 iter 70 value 76.988899 iter 80 value 76.822710 iter 90 value 76.701319 iter 100 value 76.630180 final value 76.630180 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 118.859672 iter 10 value 94.051658 iter 20 value 86.925912 iter 30 value 83.163044 iter 40 value 82.695273 iter 50 value 81.862728 iter 60 value 80.532164 iter 70 value 78.998701 iter 80 value 76.939593 iter 90 value 76.264357 iter 100 value 76.019317 final value 76.019317 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 122.886360 iter 10 value 96.776669 iter 20 value 85.569396 iter 30 value 80.661534 iter 40 value 79.728927 iter 50 value 78.594660 iter 60 value 78.330183 iter 70 value 78.159325 iter 80 value 77.859765 iter 90 value 77.398979 iter 100 value 77.130465 final value 77.130465 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 96.372159 final value 94.054599 converged Fitting Repeat 2 # weights: 103 initial value 95.254483 iter 10 value 94.054589 iter 20 value 94.052914 iter 30 value 93.778668 final value 93.714611 converged Fitting Repeat 3 # weights: 103 initial value 99.565103 final value 93.358333 converged Fitting Repeat 4 # weights: 103 initial value 96.115746 iter 10 value 94.054390 iter 20 value 94.052913 iter 30 value 93.755767 final value 93.357246 converged Fitting Repeat 5 # weights: 103 initial value 96.545866 iter 10 value 93.330198 iter 20 value 93.328900 final value 93.328610 converged Fitting Repeat 1 # weights: 305 initial value 105.846292 iter 10 value 93.333907 iter 20 value 93.333106 iter 30 value 93.116650 iter 40 value 93.111339 iter 40 value 93.111339 final value 93.111339 converged Fitting Repeat 2 # weights: 305 initial value 103.513694 iter 10 value 94.056795 iter 20 value 94.052920 final value 94.052919 converged Fitting Repeat 3 # weights: 305 initial value 101.702076 iter 10 value 94.057247 iter 20 value 93.977024 iter 30 value 93.329534 final value 93.329527 converged Fitting Repeat 4 # weights: 305 initial value 109.706252 iter 10 value 92.807810 iter 20 value 83.725632 iter 30 value 80.515745 iter 40 value 80.171792 iter 50 value 80.010968 iter 60 value 79.773717 iter 70 value 79.768204 iter 80 value 79.757338 iter 90 value 79.757124 iter 100 value 79.754511 final value 79.754511 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 102.183392 iter 10 value 94.057810 iter 20 value 93.606952 iter 30 value 93.143419 final value 93.111387 converged Fitting Repeat 1 # weights: 507 initial value 107.180192 iter 10 value 93.336955 iter 20 value 93.330566 iter 30 value 93.154556 iter 40 value 82.529156 iter 50 value 82.051626 iter 60 value 78.833517 iter 70 value 78.717901 iter 80 value 78.703462 iter 90 value 78.703372 iter 100 value 78.636312 final value 78.636312 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 91.542995 iter 10 value 83.594789 iter 20 value 81.720409 iter 30 value 81.126507 iter 40 value 80.910536 iter 50 value 80.908829 iter 60 value 80.039567 iter 70 value 79.704135 iter 80 value 79.703012 iter 90 value 79.701969 final value 79.701960 converged Fitting Repeat 3 # weights: 507 initial value 129.796736 iter 10 value 94.061015 iter 20 value 94.054591 iter 30 value 92.898235 iter 40 value 90.080657 iter 50 value 81.752369 iter 60 value 81.658232 iter 70 value 78.829681 iter 80 value 78.587828 iter 90 value 78.568539 iter 100 value 78.567929 final value 78.567929 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 102.671515 iter 10 value 94.060396 iter 20 value 91.556891 iter 30 value 91.508383 iter 40 value 90.927377 iter 50 value 90.822833 iter 60 value 90.822407 iter 60 value 90.822406 iter 60 value 90.822406 final value 90.822406 converged Fitting Repeat 5 # weights: 507 initial value 98.456793 iter 10 value 88.443150 iter 20 value 82.379825 iter 30 value 81.648200 iter 40 value 81.376071 iter 50 value 79.833119 iter 60 value 79.811700 iter 70 value 79.650951 iter 80 value 79.496201 iter 90 value 79.493915 iter 100 value 79.441736 final value 79.441736 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 129.033535 iter 10 value 117.266195 iter 20 value 107.939143 iter 30 value 106.544801 iter 40 value 105.156354 iter 50 value 104.673116 iter 60 value 103.616399 iter 70 value 102.517386 iter 80 value 102.139603 iter 90 value 101.611522 iter 100 value 101.110489 final value 101.110489 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 135.964789 iter 10 value 118.548266 iter 20 value 114.470738 iter 30 value 106.183997 iter 40 value 105.608978 iter 50 value 105.297217 iter 60 value 104.306931 iter 70 value 103.178765 iter 80 value 102.799892 iter 90 value 102.353402 iter 100 value 102.029357 final value 102.029357 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 139.354375 iter 10 value 116.956271 iter 20 value 108.350488 iter 30 value 105.722205 iter 40 value 105.158102 iter 50 value 104.021352 iter 60 value 102.547099 iter 70 value 102.168723 iter 80 value 101.430332 iter 90 value 101.141009 iter 100 value 100.863303 final value 100.863303 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 128.792045 iter 10 value 117.702322 iter 20 value 110.394686 iter 30 value 108.522543 iter 40 value 103.672507 iter 50 value 102.167894 iter 60 value 101.361235 iter 70 value 101.137574 iter 80 value 101.020033 iter 90 value 101.007201 iter 100 value 100.965999 final value 100.965999 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 147.232538 iter 10 value 117.327984 iter 20 value 107.198607 iter 30 value 103.542832 iter 40 value 102.934880 iter 50 value 102.107468 iter 60 value 101.759549 iter 70 value 101.564218 iter 80 value 101.168893 iter 90 value 101.151819 iter 100 value 101.124682 final value 101.124682 stopped after 100 iterations svmRadial ranger Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases RUNIT TEST PROTOCOL -- Tue May 9 18:44:53 2023 *********************************************** Number of test functions: 7 Number of errors: 0 Number of failures: 0 1 Test Suite : HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures Number of test functions: 7 Number of errors: 0 Number of failures: 0 Warning messages: 1: `repeats` has no meaning for this resampling method. 2: executing %dopar% sequentially: no parallel backend registered > > > > > proc.time() user system elapsed 54.666 1.418 66.855
HPiP.Rcheck/HPiP-Ex.timings
name | user | system | elapsed | |
FSmethod | 37.190 | 0.367 | 37.563 | |
FreqInteractors | 0.288 | 0.012 | 0.300 | |
calculateAAC | 0.044 | 0.004 | 0.049 | |
calculateAutocor | 0.714 | 0.016 | 0.731 | |
calculateCTDC | 0.097 | 0.000 | 0.096 | |
calculateCTDD | 0.801 | 0.004 | 0.804 | |
calculateCTDT | 0.263 | 0.000 | 0.263 | |
calculateCTriad | 0.452 | 0.004 | 0.456 | |
calculateDC | 0.134 | 0.004 | 0.138 | |
calculateF | 0.376 | 0.000 | 0.376 | |
calculateKSAAP | 0.140 | 0.004 | 0.145 | |
calculateQD_Sm | 2.199 | 0.024 | 2.224 | |
calculateTC | 2.254 | 0.052 | 2.307 | |
calculateTC_Sm | 0.351 | 0.016 | 0.367 | |
corr_plot | 37.351 | 0.392 | 37.748 | |
enrichfindP | 0.426 | 0.036 | 14.953 | |
enrichfind_hp | 0.046 | 0.008 | 1.205 | |
enrichplot | 0.367 | 0.016 | 0.383 | |
filter_missing_values | 0.001 | 0.000 | 0.002 | |
getFASTA | 0.749 | 0.013 | 9.913 | |
getHPI | 0.001 | 0.000 | 0.001 | |
get_negativePPI | 0.002 | 0.000 | 0.003 | |
get_positivePPI | 0.000 | 0.000 | 0.001 | |
impute_missing_data | 0.000 | 0.002 | 0.002 | |
plotPPI | 0.079 | 0.005 | 0.083 | |
pred_ensembel | 18.340 | 0.321 | 16.290 | |
var_imp | 39.069 | 0.409 | 39.480 | |