| Back to Build/check report for BioC 3.18: simplified long |
|
This page was generated on 2023-05-10 10:04:33 -0000 (Wed, 10 May 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-03-12 r83975) -- "Unsuffered Consequences" | 6211 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 934/2194 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.7.0 (landing page) Matineh Rahmatbakhsh
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
| Package: HPiP |
| Version: 1.7.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings HPiP_1.7.0.tar.gz |
| StartedAt: 2023-05-09 18:39:22 -0000 (Tue, 09 May 2023) |
| EndedAt: 2023-05-09 18:55:20 -0000 (Tue, 09 May 2023) |
| EllapsedTime: 958.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings HPiP_1.7.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/HPiP.Rcheck’
* using R Under development (unstable) (2023-03-12 r83975)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.2 LTS
* using session charset: UTF-8
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.7.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
var_imp 39.069 0.409 39.480
corr_plot 37.351 0.392 37.748
FSmethod 37.190 0.367 37.563
pred_ensembel 18.340 0.321 16.290
getFASTA 0.749 0.013 9.913
enrichfindP 0.426 0.036 14.953
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘HPiP_tutorial.Rmd’ using ‘UTF-8’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.17-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library’ * installing *source* package ‘HPiP’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R Under development (unstable) (2023-03-12 r83975) -- "Unsuffered Consequences"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 100.186346
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 102.579698
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 94.492275
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 98.729223
iter 10 value 92.881635
iter 20 value 86.851096
iter 30 value 86.064237
iter 40 value 86.064021
final value 86.064020
converged
Fitting Repeat 5
# weights: 103
initial value 104.470549
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 94.235041
iter 10 value 93.088709
iter 20 value 88.896505
iter 30 value 88.775576
iter 40 value 88.759956
iter 50 value 88.759027
iter 50 value 88.759027
iter 50 value 88.759027
final value 88.759027
converged
Fitting Repeat 2
# weights: 305
initial value 95.492012
final value 94.443243
converged
Fitting Repeat 3
# weights: 305
initial value 99.784568
final value 94.443243
converged
Fitting Repeat 4
# weights: 305
initial value 95.557469
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 102.223763
final value 94.400000
converged
Fitting Repeat 1
# weights: 507
initial value 105.916427
iter 10 value 94.443249
final value 94.443243
converged
Fitting Repeat 2
# weights: 507
initial value 99.812968
final value 94.443243
converged
Fitting Repeat 3
# weights: 507
initial value 107.925437
final value 94.443243
converged
Fitting Repeat 4
# weights: 507
initial value 95.747344
final value 94.326054
converged
Fitting Repeat 5
# weights: 507
initial value 99.696111
iter 10 value 85.427917
iter 20 value 82.778235
iter 30 value 82.357208
final value 82.356755
converged
Fitting Repeat 1
# weights: 103
initial value 97.923849
iter 10 value 94.484702
iter 20 value 88.868012
iter 30 value 87.702059
iter 40 value 86.342183
iter 50 value 85.264385
iter 60 value 84.194694
iter 70 value 83.165289
iter 80 value 82.727727
iter 90 value 82.260936
iter 100 value 81.756239
final value 81.756239
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 98.416652
iter 10 value 94.451856
iter 20 value 84.484623
iter 30 value 83.410574
iter 40 value 83.168926
iter 50 value 83.134957
iter 60 value 83.123459
final value 83.123457
converged
Fitting Repeat 3
# weights: 103
initial value 115.190420
iter 10 value 93.532392
iter 20 value 85.751299
iter 30 value 84.044359
iter 40 value 83.648449
iter 50 value 82.732790
iter 60 value 82.437145
iter 70 value 82.382490
final value 82.382463
converged
Fitting Repeat 4
# weights: 103
initial value 107.072637
iter 10 value 89.587933
iter 20 value 83.257717
iter 30 value 82.922962
iter 40 value 82.669874
iter 50 value 82.423208
iter 60 value 82.382464
final value 82.382463
converged
Fitting Repeat 5
# weights: 103
initial value 114.015116
iter 10 value 94.578183
iter 20 value 94.488719
iter 30 value 84.946308
iter 40 value 82.795603
iter 50 value 82.242491
iter 60 value 81.785239
iter 70 value 81.347242
iter 80 value 81.111243
iter 90 value 81.020290
final value 81.019369
converged
Fitting Repeat 1
# weights: 305
initial value 114.576041
iter 10 value 89.665211
iter 20 value 85.711129
iter 30 value 84.894022
iter 40 value 84.272666
iter 50 value 82.612573
iter 60 value 81.652377
iter 70 value 80.592185
iter 80 value 79.928327
iter 90 value 79.711921
iter 100 value 79.464186
final value 79.464186
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 105.265630
iter 10 value 94.496249
iter 20 value 94.421731
iter 30 value 89.827218
iter 40 value 88.127794
iter 50 value 85.086822
iter 60 value 81.064724
iter 70 value 80.503440
iter 80 value 80.259029
iter 90 value 80.213120
iter 100 value 80.203033
final value 80.203033
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 111.152985
iter 10 value 94.351898
iter 20 value 85.179158
iter 30 value 84.314265
iter 40 value 83.697134
iter 50 value 82.792150
iter 60 value 82.587441
iter 70 value 82.405015
iter 80 value 81.741120
iter 90 value 80.215415
iter 100 value 79.596765
final value 79.596765
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 99.596235
iter 10 value 94.508852
iter 20 value 83.375171
iter 30 value 82.876671
iter 40 value 82.633568
iter 50 value 82.564111
iter 60 value 82.407996
iter 70 value 81.054242
iter 80 value 79.838479
iter 90 value 79.701801
iter 100 value 79.659383
final value 79.659383
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 102.417549
iter 10 value 94.722226
iter 20 value 94.333732
iter 30 value 91.663139
iter 40 value 87.188723
iter 50 value 85.169590
iter 60 value 84.006625
iter 70 value 82.608644
iter 80 value 81.661026
iter 90 value 81.243147
iter 100 value 81.174310
final value 81.174310
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 116.942145
iter 10 value 94.718713
iter 20 value 92.301339
iter 30 value 89.911972
iter 40 value 83.126996
iter 50 value 82.029934
iter 60 value 80.604896
iter 70 value 79.639370
iter 80 value 79.440947
iter 90 value 79.223856
iter 100 value 78.940089
final value 78.940089
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 121.728987
iter 10 value 94.899822
iter 20 value 94.499360
iter 30 value 94.010956
iter 40 value 86.471378
iter 50 value 82.190414
iter 60 value 81.797323
iter 70 value 81.384003
iter 80 value 80.050441
iter 90 value 79.354964
iter 100 value 79.136299
final value 79.136299
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 132.113502
iter 10 value 94.965312
iter 20 value 94.400083
iter 30 value 84.418465
iter 40 value 83.807001
iter 50 value 83.340173
iter 60 value 81.899555
iter 70 value 80.844282
iter 80 value 80.115506
iter 90 value 79.889983
iter 100 value 79.436718
final value 79.436718
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 116.339132
iter 10 value 94.703265
iter 20 value 94.424102
iter 30 value 89.985609
iter 40 value 84.317796
iter 50 value 83.826822
iter 60 value 83.311642
iter 70 value 81.422837
iter 80 value 80.077098
iter 90 value 79.793366
iter 100 value 79.473748
final value 79.473748
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 123.919032
iter 10 value 94.824483
iter 20 value 93.815229
iter 30 value 82.974625
iter 40 value 80.945166
iter 50 value 80.449859
iter 60 value 80.043050
iter 70 value 79.423332
iter 80 value 79.072929
iter 90 value 78.917572
iter 100 value 78.791620
final value 78.791620
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 97.860644
final value 94.485905
converged
Fitting Repeat 2
# weights: 103
initial value 101.598859
final value 94.485987
converged
Fitting Repeat 3
# weights: 103
initial value 97.447595
final value 93.932680
converged
Fitting Repeat 4
# weights: 103
initial value 94.951319
iter 10 value 94.485835
iter 20 value 94.394973
iter 30 value 88.064474
iter 40 value 88.030867
iter 50 value 88.026933
iter 60 value 88.023701
iter 70 value 88.015590
iter 80 value 88.013782
iter 90 value 88.010778
iter 100 value 83.297476
final value 83.297476
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 97.751245
final value 94.485720
converged
Fitting Repeat 1
# weights: 305
initial value 98.081982
iter 10 value 94.488965
iter 20 value 94.481917
iter 30 value 83.859995
iter 40 value 83.573862
iter 50 value 83.558860
iter 60 value 83.554176
iter 70 value 83.432309
iter 80 value 83.300908
final value 83.300764
converged
Fitting Repeat 2
# weights: 305
initial value 102.600748
iter 10 value 94.488873
iter 20 value 94.484282
final value 94.484260
converged
Fitting Repeat 3
# weights: 305
initial value 98.737246
iter 10 value 94.488821
iter 20 value 94.436080
iter 30 value 87.055783
iter 40 value 82.950614
iter 50 value 82.946307
iter 60 value 82.945336
final value 82.944907
converged
Fitting Repeat 4
# weights: 305
initial value 104.091505
iter 10 value 94.489102
iter 20 value 94.484401
iter 30 value 93.522398
iter 40 value 84.467967
iter 50 value 82.734461
iter 60 value 80.573191
iter 70 value 80.233602
iter 80 value 80.215401
iter 90 value 80.192977
iter 90 value 80.192977
final value 80.192977
converged
Fitting Repeat 5
# weights: 305
initial value 98.302674
iter 10 value 94.447810
iter 20 value 94.265683
iter 30 value 85.992310
iter 40 value 85.854276
iter 50 value 85.400899
iter 60 value 84.748474
iter 70 value 81.328255
iter 80 value 79.920772
iter 90 value 79.523186
iter 100 value 79.518082
final value 79.518082
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 98.437713
iter 10 value 93.272725
iter 20 value 92.860855
iter 30 value 91.876907
iter 40 value 91.597035
iter 50 value 90.898941
iter 60 value 90.874814
final value 90.874641
converged
Fitting Repeat 2
# weights: 507
initial value 114.606614
iter 10 value 94.491361
iter 20 value 91.745845
iter 30 value 83.556768
iter 40 value 83.554329
iter 50 value 83.527156
iter 60 value 83.523157
iter 60 value 83.523157
final value 83.523157
converged
Fitting Repeat 3
# weights: 507
initial value 108.486263
iter 10 value 94.445722
iter 20 value 94.258404
iter 30 value 91.882342
iter 40 value 91.573363
final value 91.562970
converged
Fitting Repeat 4
# weights: 507
initial value 119.309548
iter 10 value 94.451421
iter 20 value 94.444723
iter 30 value 89.219527
iter 40 value 83.896149
iter 50 value 83.146093
iter 60 value 83.054553
final value 83.054525
converged
Fitting Repeat 5
# weights: 507
initial value 99.873483
iter 10 value 94.489576
iter 20 value 90.191925
iter 30 value 89.795319
iter 40 value 89.766656
iter 50 value 83.571121
iter 60 value 83.562365
iter 70 value 83.457230
iter 80 value 83.393997
iter 90 value 83.379121
iter 100 value 82.831761
final value 82.831761
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 97.423455
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 96.810681
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 99.006931
iter 10 value 94.484217
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 113.324503
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 95.276751
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 99.136169
iter 10 value 94.212061
final value 94.147058
converged
Fitting Repeat 2
# weights: 305
initial value 96.980638
final value 94.449438
converged
Fitting Repeat 3
# weights: 305
initial value 97.522785
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 102.099804
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 116.705526
final value 94.354396
converged
Fitting Repeat 1
# weights: 507
initial value 95.292780
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 95.218816
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 95.085469
final value 94.354396
converged
Fitting Repeat 4
# weights: 507
initial value 105.469380
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 98.928422
final value 94.453333
converged
Fitting Repeat 1
# weights: 103
initial value 102.691315
iter 10 value 93.904378
iter 20 value 91.796534
iter 30 value 91.667082
iter 40 value 91.637609
iter 50 value 91.611107
iter 60 value 91.599473
final value 91.599467
converged
Fitting Repeat 2
# weights: 103
initial value 99.549512
iter 10 value 94.522593
iter 20 value 93.914445
iter 30 value 89.168591
iter 40 value 87.141239
iter 50 value 86.339157
iter 60 value 85.167094
iter 70 value 84.442320
iter 80 value 84.288004
iter 90 value 83.747382
iter 100 value 83.626169
final value 83.626169
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 96.476079
iter 10 value 93.604203
iter 20 value 87.991504
iter 30 value 86.837282
iter 40 value 86.514276
iter 50 value 86.409368
iter 60 value 86.276057
iter 70 value 86.098888
iter 80 value 86.097976
iter 80 value 86.097975
iter 80 value 86.097975
final value 86.097975
converged
Fitting Repeat 4
# weights: 103
initial value 97.182984
iter 10 value 94.486872
iter 20 value 93.862822
iter 30 value 89.655268
iter 40 value 88.015539
iter 50 value 86.825309
iter 60 value 85.799325
iter 70 value 84.895903
iter 80 value 84.673988
iter 90 value 84.533127
iter 100 value 83.948918
final value 83.948918
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 102.025972
iter 10 value 94.488580
iter 20 value 93.232309
iter 30 value 90.133971
iter 40 value 86.943336
iter 50 value 86.061990
iter 60 value 85.873030
iter 70 value 83.986236
iter 80 value 83.940106
iter 90 value 83.906762
iter 100 value 83.882390
final value 83.882390
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 103.964708
iter 10 value 94.718021
iter 20 value 87.777687
iter 30 value 86.896992
iter 40 value 86.710748
iter 50 value 86.506364
iter 60 value 86.448236
iter 70 value 86.347164
iter 80 value 85.431000
iter 90 value 85.100802
iter 100 value 85.028596
final value 85.028596
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 103.680262
iter 10 value 94.380324
iter 20 value 91.231685
iter 30 value 90.035768
iter 40 value 89.231270
iter 50 value 87.824728
iter 60 value 85.836288
iter 70 value 83.441009
iter 80 value 83.098685
iter 90 value 82.722220
iter 100 value 82.695404
final value 82.695404
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 100.009082
iter 10 value 94.608774
iter 20 value 92.080986
iter 30 value 88.890241
iter 40 value 88.262021
iter 50 value 86.138148
iter 60 value 84.380050
iter 70 value 83.842082
iter 80 value 83.668668
iter 90 value 83.120808
iter 100 value 82.838590
final value 82.838590
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 99.709168
iter 10 value 94.358717
iter 20 value 91.986297
iter 30 value 88.749307
iter 40 value 84.994528
iter 50 value 84.856445
iter 60 value 84.701460
iter 70 value 84.414438
iter 80 value 84.055705
iter 90 value 83.864005
iter 100 value 83.821565
final value 83.821565
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 124.071125
iter 10 value 94.032504
iter 20 value 90.473382
iter 30 value 88.669213
iter 40 value 87.514531
iter 50 value 86.077814
iter 60 value 85.458946
iter 70 value 85.075243
iter 80 value 84.019913
iter 90 value 83.809940
iter 100 value 83.512608
final value 83.512608
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 119.314469
iter 10 value 94.793753
iter 20 value 86.366528
iter 30 value 83.759413
iter 40 value 83.470666
iter 50 value 82.992955
iter 60 value 82.746296
iter 70 value 82.594284
iter 80 value 82.422221
iter 90 value 82.294907
iter 100 value 82.240204
final value 82.240204
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 117.165680
iter 10 value 94.587971
iter 20 value 93.141286
iter 30 value 92.183870
iter 40 value 88.466895
iter 50 value 85.948371
iter 60 value 84.350542
iter 70 value 83.823468
iter 80 value 83.263344
iter 90 value 83.041653
iter 100 value 82.951501
final value 82.951501
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 112.830125
iter 10 value 94.679949
iter 20 value 94.600932
iter 30 value 90.716000
iter 40 value 85.591111
iter 50 value 84.615342
iter 60 value 84.361571
iter 70 value 84.171812
iter 80 value 84.125657
iter 90 value 83.684717
iter 100 value 83.318945
final value 83.318945
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 107.729741
iter 10 value 94.675751
iter 20 value 94.500289
iter 30 value 89.460040
iter 40 value 89.209752
iter 50 value 88.315065
iter 60 value 87.531382
iter 70 value 86.519053
iter 80 value 85.970994
iter 90 value 85.885542
iter 100 value 85.358996
final value 85.358996
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 126.896146
iter 10 value 94.469007
iter 20 value 88.688423
iter 30 value 87.778780
iter 40 value 85.809786
iter 50 value 84.920500
iter 60 value 84.636896
iter 70 value 84.507107
iter 80 value 84.028472
iter 90 value 83.616749
iter 100 value 83.561049
final value 83.561049
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 104.474443
final value 94.485775
converged
Fitting Repeat 2
# weights: 103
initial value 107.820931
iter 10 value 94.486000
iter 20 value 94.098871
iter 30 value 88.953053
iter 40 value 88.890415
iter 50 value 88.054779
iter 60 value 87.972022
iter 70 value 87.971913
iter 80 value 87.860301
iter 90 value 87.057523
iter 100 value 86.437489
final value 86.437489
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 100.865082
final value 94.485667
converged
Fitting Repeat 4
# weights: 103
initial value 98.471587
final value 94.488181
converged
Fitting Repeat 5
# weights: 103
initial value 95.864923
iter 10 value 94.356067
iter 20 value 93.683805
iter 30 value 88.153767
final value 88.079774
converged
Fitting Repeat 1
# weights: 305
initial value 101.530461
iter 10 value 94.488547
iter 20 value 94.454526
iter 30 value 94.354454
iter 30 value 94.354454
iter 30 value 94.354454
final value 94.354454
converged
Fitting Repeat 2
# weights: 305
initial value 104.295253
iter 10 value 94.487986
iter 20 value 94.456950
iter 30 value 93.662179
iter 40 value 93.661634
final value 93.661624
converged
Fitting Repeat 3
# weights: 305
initial value 97.339999
iter 10 value 94.488829
iter 20 value 94.480321
iter 30 value 94.385915
iter 40 value 92.260006
iter 50 value 90.592247
iter 60 value 90.591412
final value 90.591358
converged
Fitting Repeat 4
# weights: 305
initial value 95.112035
iter 10 value 94.488593
iter 20 value 94.258555
iter 30 value 92.949741
iter 40 value 91.330579
iter 50 value 91.245572
iter 60 value 91.216132
iter 70 value 91.215984
final value 91.215977
converged
Fitting Repeat 5
# weights: 305
initial value 106.247200
iter 10 value 94.316857
iter 20 value 94.310968
final value 94.308555
converged
Fitting Repeat 1
# weights: 507
initial value 104.975609
iter 10 value 94.492432
iter 20 value 94.395429
iter 30 value 88.583024
iter 40 value 86.491463
iter 50 value 86.308268
iter 60 value 83.794698
iter 70 value 83.075015
iter 80 value 82.984333
iter 90 value 82.835172
iter 100 value 82.826663
final value 82.826663
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 115.022584
iter 10 value 94.492051
iter 20 value 94.481144
iter 30 value 93.876248
iter 40 value 88.379450
iter 50 value 88.026598
iter 60 value 85.929929
iter 70 value 85.605036
iter 80 value 85.571235
iter 90 value 85.535361
iter 100 value 85.535112
final value 85.535112
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 103.404541
iter 10 value 94.491423
iter 20 value 92.766812
iter 30 value 92.607603
iter 40 value 91.596389
iter 50 value 91.406241
final value 91.342538
converged
Fitting Repeat 4
# weights: 507
initial value 106.795406
iter 10 value 94.493245
iter 20 value 94.171741
iter 30 value 88.818384
iter 40 value 88.817226
iter 50 value 88.765218
iter 60 value 87.835731
iter 70 value 86.779522
iter 80 value 86.779112
iter 90 value 86.768864
iter 100 value 86.755785
final value 86.755785
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 94.901060
iter 10 value 94.362249
iter 20 value 94.333130
iter 30 value 94.308472
iter 40 value 94.304573
final value 94.304492
converged
Fitting Repeat 1
# weights: 103
initial value 108.279044
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 101.236015
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 94.084514
final value 94.032967
converged
Fitting Repeat 4
# weights: 103
initial value 113.873696
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 94.403829
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 102.082873
final value 93.008964
converged
Fitting Repeat 2
# weights: 305
initial value 103.235594
final value 94.032967
converged
Fitting Repeat 3
# weights: 305
initial value 115.169094
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 107.987487
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 96.097353
final value 94.032967
converged
Fitting Repeat 1
# weights: 507
initial value 105.047079
final value 93.356643
converged
Fitting Repeat 2
# weights: 507
initial value 95.327804
iter 10 value 91.736482
iter 20 value 91.732288
final value 91.732281
converged
Fitting Repeat 3
# weights: 507
initial value 100.148759
final value 93.455030
converged
Fitting Repeat 4
# weights: 507
initial value 105.536893
final value 94.052910
converged
Fitting Repeat 5
# weights: 507
initial value 96.595040
final value 94.052910
converged
Fitting Repeat 1
# weights: 103
initial value 103.445802
iter 10 value 94.016990
iter 20 value 92.964179
iter 30 value 92.929553
iter 40 value 92.894489
iter 50 value 92.019512
iter 60 value 86.768371
iter 70 value 83.361402
iter 80 value 82.588598
iter 90 value 82.267869
iter 100 value 81.729953
final value 81.729953
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 99.058687
iter 10 value 94.054394
iter 20 value 92.986507
iter 30 value 92.915548
iter 40 value 92.768900
iter 50 value 92.716761
iter 60 value 87.737406
iter 70 value 86.012167
iter 80 value 83.366073
iter 90 value 82.282732
iter 100 value 81.619799
final value 81.619799
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 112.351903
iter 10 value 93.403001
iter 20 value 92.765556
iter 30 value 89.957269
iter 40 value 85.939005
iter 50 value 83.787606
iter 60 value 83.493253
iter 70 value 83.079796
iter 80 value 82.054724
iter 90 value 81.626907
iter 100 value 81.225010
final value 81.225010
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 111.878531
iter 10 value 94.028944
iter 20 value 93.571768
iter 30 value 93.438770
iter 40 value 90.465810
iter 50 value 84.943562
iter 60 value 82.396191
iter 70 value 81.933191
iter 80 value 81.116218
iter 90 value 80.963302
iter 100 value 80.795902
final value 80.795902
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 101.925103
iter 10 value 93.813064
iter 20 value 93.063351
iter 30 value 91.349127
iter 40 value 86.950551
iter 50 value 83.542208
iter 60 value 82.144690
iter 70 value 82.057540
iter 80 value 81.993152
iter 90 value 81.559560
iter 100 value 81.137981
final value 81.137981
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 102.220715
iter 10 value 94.207354
iter 20 value 94.035558
iter 30 value 88.590140
iter 40 value 86.319391
iter 50 value 85.352996
iter 60 value 85.102604
iter 70 value 84.997359
iter 80 value 83.463822
iter 90 value 81.534083
iter 100 value 80.221811
final value 80.221811
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 108.357392
iter 10 value 93.667731
iter 20 value 89.230685
iter 30 value 86.796483
iter 40 value 86.377818
iter 50 value 84.690365
iter 60 value 84.052477
iter 70 value 81.115573
iter 80 value 79.773184
iter 90 value 79.044069
iter 100 value 78.774317
final value 78.774317
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 140.754588
iter 10 value 100.468482
iter 20 value 94.121342
iter 30 value 87.756438
iter 40 value 84.774025
iter 50 value 84.152344
iter 60 value 84.026498
iter 70 value 83.943431
iter 80 value 83.665220
iter 90 value 83.618891
iter 100 value 83.408295
final value 83.408295
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 102.917864
iter 10 value 93.888709
iter 20 value 92.934014
iter 30 value 86.085275
iter 40 value 85.146933
iter 50 value 83.169261
iter 60 value 82.017211
iter 70 value 81.427021
iter 80 value 80.906689
iter 90 value 80.317523
iter 100 value 79.580204
final value 79.580204
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 111.235326
iter 10 value 94.106927
iter 20 value 93.909297
iter 30 value 88.199955
iter 40 value 85.542838
iter 50 value 85.412405
iter 60 value 82.282053
iter 70 value 79.868341
iter 80 value 79.044293
iter 90 value 78.860351
iter 100 value 78.737038
final value 78.737038
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 106.409447
iter 10 value 93.940154
iter 20 value 91.525793
iter 30 value 86.497283
iter 40 value 83.962393
iter 50 value 83.645647
iter 60 value 81.968750
iter 70 value 80.701482
iter 80 value 80.339862
iter 90 value 80.213391
iter 100 value 79.824389
final value 79.824389
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 124.638023
iter 10 value 93.836619
iter 20 value 85.754883
iter 30 value 82.988711
iter 40 value 81.977246
iter 50 value 81.528735
iter 60 value 79.810706
iter 70 value 78.935737
iter 80 value 78.864838
iter 90 value 78.772572
iter 100 value 78.730262
final value 78.730262
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 108.382477
iter 10 value 94.085060
iter 20 value 86.607365
iter 30 value 84.953411
iter 40 value 83.507513
iter 50 value 82.151942
iter 60 value 80.848189
iter 70 value 79.608394
iter 80 value 79.251106
iter 90 value 79.203220
iter 100 value 79.189176
final value 79.189176
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 110.497431
iter 10 value 93.229136
iter 20 value 83.822696
iter 30 value 81.649233
iter 40 value 80.194484
iter 50 value 79.599527
iter 60 value 79.426443
iter 70 value 79.287003
iter 80 value 79.256292
iter 90 value 79.204466
iter 100 value 78.952067
final value 78.952067
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 125.057441
iter 10 value 94.382745
iter 20 value 94.075826
iter 30 value 93.783340
iter 40 value 89.413428
iter 50 value 87.595176
iter 60 value 84.557392
iter 70 value 82.704355
iter 80 value 81.310547
iter 90 value 80.387796
iter 100 value 80.180660
final value 80.180660
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 94.959577
final value 94.054541
converged
Fitting Repeat 2
# weights: 103
initial value 94.384385
final value 94.054398
converged
Fitting Repeat 3
# weights: 103
initial value 109.056693
final value 94.054594
converged
Fitting Repeat 4
# weights: 103
initial value 96.667046
final value 94.054361
converged
Fitting Repeat 5
# weights: 103
initial value 97.068643
iter 10 value 93.978274
iter 20 value 93.977188
iter 30 value 93.340077
final value 93.337652
converged
Fitting Repeat 1
# weights: 305
initial value 95.607188
iter 10 value 94.038040
iter 20 value 94.033247
iter 30 value 89.149199
iter 40 value 83.967359
iter 50 value 83.952417
iter 60 value 83.817318
final value 83.816859
converged
Fitting Repeat 2
# weights: 305
initial value 100.444740
iter 10 value 90.901734
iter 20 value 83.871422
iter 30 value 80.193488
iter 40 value 79.187669
iter 50 value 78.820196
iter 60 value 78.817579
iter 70 value 78.815088
iter 80 value 78.810413
iter 90 value 78.806653
iter 100 value 78.750490
final value 78.750490
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 101.400555
iter 10 value 94.066082
iter 20 value 94.058684
iter 30 value 92.839578
iter 40 value 92.837235
iter 50 value 92.835188
iter 60 value 92.803892
iter 70 value 83.576937
iter 80 value 83.549463
iter 90 value 83.540313
iter 100 value 83.538688
final value 83.538688
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 94.639360
iter 10 value 92.608430
iter 20 value 92.606763
iter 30 value 92.602209
iter 40 value 92.530260
iter 50 value 88.061735
iter 60 value 87.983664
iter 70 value 85.849755
final value 85.847261
converged
Fitting Repeat 5
# weights: 305
initial value 106.391885
iter 10 value 92.836073
iter 20 value 92.831752
iter 30 value 92.684692
iter 40 value 82.947427
iter 50 value 82.167181
iter 60 value 82.081476
iter 70 value 81.926474
iter 80 value 81.901611
iter 90 value 81.901492
iter 100 value 81.899620
final value 81.899620
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 121.004499
iter 10 value 94.040405
iter 20 value 93.503117
iter 30 value 91.666781
iter 40 value 82.784879
iter 50 value 81.425733
iter 60 value 81.192165
iter 70 value 79.602783
iter 80 value 78.623020
iter 90 value 78.512702
iter 100 value 78.510734
final value 78.510734
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 96.446071
iter 10 value 87.234302
iter 20 value 84.095333
iter 30 value 84.087347
iter 40 value 84.083116
iter 50 value 83.937498
iter 60 value 82.906419
iter 70 value 79.649407
iter 80 value 79.160941
iter 90 value 78.478345
iter 100 value 78.462675
final value 78.462675
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 95.488386
iter 10 value 94.060354
iter 20 value 91.770983
iter 30 value 83.738725
iter 40 value 83.419811
iter 50 value 83.214495
iter 60 value 83.137017
iter 70 value 83.134641
iter 80 value 83.132643
iter 90 value 83.131952
iter 100 value 83.066697
final value 83.066697
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 112.326542
iter 10 value 93.675857
iter 20 value 92.152026
iter 30 value 86.263370
iter 40 value 85.333256
iter 50 value 85.328645
iter 60 value 83.715889
iter 70 value 83.715216
iter 80 value 83.707657
iter 90 value 83.662268
iter 100 value 83.568075
final value 83.568075
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 97.988894
iter 10 value 93.711760
iter 20 value 93.308952
iter 30 value 93.304961
iter 40 value 91.394221
iter 50 value 83.991766
iter 60 value 83.743880
iter 70 value 83.706965
final value 83.706961
converged
Fitting Repeat 1
# weights: 103
initial value 107.760922
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 106.409829
iter 10 value 94.307552
iter 20 value 94.304611
final value 94.304609
converged
Fitting Repeat 3
# weights: 103
initial value 95.331334
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 98.696813
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 97.672507
iter 10 value 88.590642
final value 88.580617
converged
Fitting Repeat 1
# weights: 305
initial value 101.245927
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 104.070636
final value 94.466823
converged
Fitting Repeat 3
# weights: 305
initial value 97.577616
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 151.024024
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 106.374470
final value 94.046703
converged
Fitting Repeat 1
# weights: 507
initial value 107.462577
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 95.035162
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 98.501635
iter 10 value 92.159721
iter 20 value 91.683410
iter 30 value 91.673403
final value 91.673078
converged
Fitting Repeat 4
# weights: 507
initial value 96.999601
iter 10 value 94.466667
iter 10 value 94.466667
iter 10 value 94.466667
final value 94.466667
converged
Fitting Repeat 5
# weights: 507
initial value 106.344362
final value 94.466823
converged
Fitting Repeat 1
# weights: 103
initial value 101.833671
iter 10 value 94.468428
iter 20 value 92.503253
iter 30 value 85.603173
iter 40 value 85.490873
iter 50 value 84.913837
iter 60 value 84.591048
iter 70 value 84.414589
iter 80 value 84.392263
final value 84.392216
converged
Fitting Repeat 2
# weights: 103
initial value 103.645851
iter 10 value 94.307999
iter 20 value 90.302918
iter 30 value 88.046401
iter 40 value 87.403605
iter 50 value 86.082448
iter 60 value 85.552880
iter 70 value 85.036359
iter 80 value 83.151357
iter 90 value 83.072102
final value 83.072067
converged
Fitting Repeat 3
# weights: 103
initial value 113.722302
iter 10 value 94.489284
iter 20 value 94.059084
iter 30 value 87.209958
iter 40 value 86.046937
iter 50 value 85.249456
iter 60 value 84.206536
iter 70 value 83.788010
iter 80 value 83.381172
final value 83.380175
converged
Fitting Repeat 4
# weights: 103
initial value 107.781975
iter 10 value 94.486562
iter 20 value 94.409636
iter 30 value 89.901343
iter 40 value 89.636145
iter 50 value 87.579180
iter 60 value 86.296858
iter 70 value 84.194523
iter 80 value 83.435092
iter 90 value 83.129657
iter 100 value 83.072070
final value 83.072070
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 102.502746
iter 10 value 94.298165
iter 20 value 87.443156
iter 30 value 85.914498
iter 40 value 85.380495
iter 50 value 85.235497
iter 60 value 85.108371
iter 70 value 84.919598
iter 80 value 84.871861
final value 84.870327
converged
Fitting Repeat 1
# weights: 305
initial value 102.829072
iter 10 value 94.222667
iter 20 value 88.736816
iter 30 value 86.141634
iter 40 value 85.246436
iter 50 value 85.020450
iter 60 value 84.872932
iter 70 value 84.611592
iter 80 value 84.578787
iter 90 value 84.211651
iter 100 value 82.858627
final value 82.858627
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 106.208350
iter 10 value 94.546774
iter 20 value 93.848058
iter 30 value 90.103613
iter 40 value 89.434628
iter 50 value 86.663903
iter 60 value 84.660926
iter 70 value 84.277663
iter 80 value 84.032030
iter 90 value 83.544137
iter 100 value 82.894117
final value 82.894117
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 99.410713
iter 10 value 85.972371
iter 20 value 85.429820
iter 30 value 84.267834
iter 40 value 83.786540
iter 50 value 83.125813
iter 60 value 82.379567
iter 70 value 81.859220
iter 80 value 81.733112
iter 90 value 81.693374
iter 100 value 81.657703
final value 81.657703
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 105.038200
iter 10 value 94.522380
iter 20 value 94.304541
iter 30 value 89.206137
iter 40 value 87.752409
iter 50 value 87.332101
iter 60 value 85.610719
iter 70 value 82.424887
iter 80 value 81.959150
iter 90 value 81.826293
iter 100 value 81.695225
final value 81.695225
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 109.055625
iter 10 value 94.456993
iter 20 value 89.888384
iter 30 value 86.928820
iter 40 value 86.059973
iter 50 value 85.151093
iter 60 value 84.208488
iter 70 value 84.164006
iter 80 value 84.093515
iter 90 value 83.637689
iter 100 value 82.086007
final value 82.086007
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 107.839757
iter 10 value 94.795175
iter 20 value 94.453526
iter 30 value 89.780296
iter 40 value 87.630846
iter 50 value 83.911377
iter 60 value 82.622976
iter 70 value 82.223644
iter 80 value 82.071480
iter 90 value 81.956018
iter 100 value 81.650307
final value 81.650307
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 110.485575
iter 10 value 96.133487
iter 20 value 95.347324
iter 30 value 85.965344
iter 40 value 85.531648
iter 50 value 84.710469
iter 60 value 82.824067
iter 70 value 82.189762
iter 80 value 82.086627
iter 90 value 81.729664
iter 100 value 81.656271
final value 81.656271
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 119.825848
iter 10 value 94.694845
iter 20 value 92.158918
iter 30 value 89.886538
iter 40 value 88.616774
iter 50 value 84.792353
iter 60 value 83.398039
iter 70 value 82.416044
iter 80 value 82.152691
iter 90 value 81.932672
iter 100 value 81.675074
final value 81.675074
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 124.402581
iter 10 value 94.466472
iter 20 value 92.275608
iter 30 value 89.913978
iter 40 value 89.119277
iter 50 value 88.957918
iter 60 value 88.729025
iter 70 value 86.860030
iter 80 value 85.532738
iter 90 value 83.086643
iter 100 value 82.881536
final value 82.881536
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 111.597044
iter 10 value 94.785046
iter 20 value 94.490343
iter 30 value 94.488773
iter 40 value 94.441490
iter 50 value 92.962492
iter 60 value 89.482302
iter 70 value 88.148692
iter 80 value 86.327723
iter 90 value 85.493080
iter 100 value 84.395393
final value 84.395393
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 102.228055
iter 10 value 94.485884
final value 94.484215
converged
Fitting Repeat 2
# weights: 103
initial value 99.779799
final value 94.485892
converged
Fitting Repeat 3
# weights: 103
initial value 97.549521
final value 94.485958
converged
Fitting Repeat 4
# weights: 103
initial value 100.875229
iter 10 value 94.486005
final value 94.484219
converged
Fitting Repeat 5
# weights: 103
initial value 95.759171
final value 94.486019
converged
Fitting Repeat 1
# weights: 305
initial value 94.591608
iter 10 value 94.488956
iter 20 value 94.447154
iter 30 value 88.638144
iter 40 value 87.156079
iter 50 value 81.446880
iter 60 value 80.373082
iter 70 value 80.370175
iter 80 value 80.369588
final value 80.369385
converged
Fitting Repeat 2
# weights: 305
initial value 101.410147
iter 10 value 94.052312
iter 20 value 93.363726
iter 30 value 88.741549
iter 40 value 88.598410
iter 50 value 88.583725
final value 88.583673
converged
Fitting Repeat 3
# weights: 305
initial value 113.894555
iter 10 value 94.471661
iter 20 value 94.468758
iter 20 value 94.468758
iter 20 value 94.468758
final value 94.468758
converged
Fitting Repeat 4
# weights: 305
initial value 108.276551
iter 10 value 94.488945
iter 20 value 94.484232
final value 94.484227
converged
Fitting Repeat 5
# weights: 305
initial value 117.129444
iter 10 value 94.488695
iter 20 value 94.484452
iter 30 value 91.450500
iter 40 value 87.374354
iter 50 value 87.292840
iter 60 value 87.292569
iter 70 value 87.283562
iter 80 value 86.685682
iter 90 value 80.851616
iter 100 value 80.275669
final value 80.275669
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 95.654370
iter 10 value 94.492666
iter 20 value 94.161632
iter 30 value 88.822196
iter 40 value 88.742089
iter 50 value 86.867431
iter 60 value 86.838729
iter 70 value 86.210219
iter 80 value 83.718399
iter 90 value 83.691645
iter 100 value 83.688948
final value 83.688948
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 103.693421
iter 10 value 94.392120
iter 20 value 85.016303
iter 30 value 84.727485
iter 40 value 83.776574
final value 83.776482
converged
Fitting Repeat 3
# weights: 507
initial value 96.558563
iter 10 value 94.475156
iter 20 value 94.471148
iter 30 value 94.470225
iter 40 value 94.182743
iter 50 value 89.802644
iter 60 value 88.021788
iter 70 value 84.277920
iter 80 value 81.077840
iter 90 value 80.950771
iter 100 value 80.548395
final value 80.548395
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 109.941880
iter 10 value 94.492436
iter 20 value 94.458997
iter 30 value 93.944399
iter 40 value 90.449236
iter 50 value 90.356803
iter 60 value 90.356506
iter 70 value 90.111406
iter 80 value 89.864035
iter 90 value 89.862808
iter 100 value 89.862541
final value 89.862541
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 123.690497
iter 10 value 94.475657
iter 20 value 94.471198
iter 30 value 94.440527
iter 40 value 87.527072
iter 50 value 85.740661
iter 60 value 83.779151
iter 70 value 81.016614
iter 80 value 80.305919
iter 90 value 80.202173
iter 100 value 80.073264
final value 80.073264
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 98.486513
iter 10 value 92.646020
iter 20 value 83.509838
iter 30 value 83.412102
iter 40 value 82.474469
final value 82.461043
converged
Fitting Repeat 2
# weights: 103
initial value 123.494438
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 99.469820
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 99.109008
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 96.182690
final value 92.211111
converged
Fitting Repeat 1
# weights: 305
initial value 96.268318
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 98.929963
iter 10 value 93.328267
final value 93.328261
converged
Fitting Repeat 3
# weights: 305
initial value 98.870827
iter 10 value 93.328281
final value 93.328261
converged
Fitting Repeat 4
# weights: 305
initial value 96.186993
iter 10 value 92.211121
final value 92.211111
converged
Fitting Repeat 5
# weights: 305
initial value 104.145624
iter 10 value 93.809177
iter 20 value 93.804885
final value 93.804878
converged
Fitting Repeat 1
# weights: 507
initial value 102.690892
final value 94.052910
converged
Fitting Repeat 2
# weights: 507
initial value 108.001044
final value 94.052910
converged
Fitting Repeat 3
# weights: 507
initial value 94.488084
iter 10 value 93.048077
iter 20 value 88.804750
iter 30 value 82.752459
iter 40 value 82.740245
iter 50 value 82.717918
iter 60 value 82.715109
iter 60 value 82.715109
iter 60 value 82.715109
final value 82.715109
converged
Fitting Repeat 4
# weights: 507
initial value 109.587940
final value 94.052910
converged
Fitting Repeat 5
# weights: 507
initial value 99.393609
iter 10 value 91.666797
final value 91.666671
converged
Fitting Repeat 1
# weights: 103
initial value 96.865542
iter 10 value 94.108058
iter 20 value 85.191474
iter 30 value 83.307401
iter 40 value 82.088988
iter 50 value 79.164867
iter 60 value 78.219921
iter 70 value 78.021300
iter 80 value 77.685861
iter 90 value 77.560021
final value 77.559995
converged
Fitting Repeat 2
# weights: 103
initial value 98.538447
iter 10 value 93.893292
iter 20 value 83.575339
iter 30 value 82.569121
iter 40 value 81.396188
iter 50 value 81.231520
iter 60 value 81.182336
iter 70 value 81.169001
final value 81.169001
converged
Fitting Repeat 3
# weights: 103
initial value 99.801690
iter 10 value 94.047622
iter 20 value 83.257654
iter 30 value 82.437227
iter 40 value 81.653654
iter 50 value 81.612605
iter 60 value 81.595427
final value 81.593652
converged
Fitting Repeat 4
# weights: 103
initial value 98.407648
iter 10 value 93.953337
iter 20 value 93.537070
iter 30 value 93.009503
iter 40 value 90.463813
iter 50 value 88.142775
iter 60 value 87.964621
iter 70 value 86.685070
iter 80 value 82.189122
iter 90 value 81.626853
iter 100 value 81.443508
final value 81.443508
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 103.681503
iter 10 value 94.597851
iter 20 value 93.719199
iter 30 value 88.460949
iter 40 value 82.699749
iter 50 value 82.370452
iter 60 value 81.604266
iter 70 value 81.027447
iter 80 value 81.020998
final value 81.020902
converged
Fitting Repeat 1
# weights: 305
initial value 131.567487
iter 10 value 94.618267
iter 20 value 91.609316
iter 30 value 85.093449
iter 40 value 84.344995
iter 50 value 83.255758
iter 60 value 78.894551
iter 70 value 77.515633
iter 80 value 77.254243
iter 90 value 76.934233
iter 100 value 76.768143
final value 76.768143
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 113.482707
iter 10 value 94.100506
iter 20 value 93.936416
iter 30 value 93.187369
iter 40 value 88.466494
iter 50 value 80.540121
iter 60 value 78.158470
iter 70 value 76.720616
iter 80 value 76.249367
iter 90 value 76.177273
iter 100 value 76.089895
final value 76.089895
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 104.400771
iter 10 value 94.045108
iter 20 value 88.837813
iter 30 value 82.736741
iter 40 value 81.851851
iter 50 value 79.747708
iter 60 value 78.336906
iter 70 value 77.867410
iter 80 value 77.808830
iter 90 value 77.792796
final value 77.792790
converged
Fitting Repeat 4
# weights: 305
initial value 100.460334
iter 10 value 94.090560
iter 20 value 93.919306
iter 30 value 87.718860
iter 40 value 85.551107
iter 50 value 82.535670
iter 60 value 81.544531
iter 70 value 81.471974
iter 80 value 80.851669
iter 90 value 79.399625
iter 100 value 79.250171
final value 79.250171
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 100.927151
iter 10 value 94.011311
iter 20 value 82.979031
iter 30 value 79.629343
iter 40 value 78.535911
iter 50 value 78.154214
iter 60 value 77.741083
iter 70 value 77.457994
iter 80 value 77.448474
iter 90 value 77.438263
iter 100 value 77.348984
final value 77.348984
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 112.249519
iter 10 value 94.309276
iter 20 value 88.178812
iter 30 value 84.072156
iter 40 value 81.697037
iter 50 value 81.022890
iter 60 value 78.898503
iter 70 value 77.520967
iter 80 value 76.739731
iter 90 value 76.477553
iter 100 value 76.415162
final value 76.415162
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 102.957356
iter 10 value 90.950097
iter 20 value 84.202439
iter 30 value 83.365042
iter 40 value 82.015003
iter 50 value 80.904435
iter 60 value 80.314215
iter 70 value 79.750962
iter 80 value 78.786709
iter 90 value 78.310383
iter 100 value 77.718621
final value 77.718621
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 103.289166
iter 10 value 96.158193
iter 20 value 88.810495
iter 30 value 83.675489
iter 40 value 80.446896
iter 50 value 78.406465
iter 60 value 77.287992
iter 70 value 76.988899
iter 80 value 76.822710
iter 90 value 76.701319
iter 100 value 76.630180
final value 76.630180
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 118.859672
iter 10 value 94.051658
iter 20 value 86.925912
iter 30 value 83.163044
iter 40 value 82.695273
iter 50 value 81.862728
iter 60 value 80.532164
iter 70 value 78.998701
iter 80 value 76.939593
iter 90 value 76.264357
iter 100 value 76.019317
final value 76.019317
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 122.886360
iter 10 value 96.776669
iter 20 value 85.569396
iter 30 value 80.661534
iter 40 value 79.728927
iter 50 value 78.594660
iter 60 value 78.330183
iter 70 value 78.159325
iter 80 value 77.859765
iter 90 value 77.398979
iter 100 value 77.130465
final value 77.130465
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 96.372159
final value 94.054599
converged
Fitting Repeat 2
# weights: 103
initial value 95.254483
iter 10 value 94.054589
iter 20 value 94.052914
iter 30 value 93.778668
final value 93.714611
converged
Fitting Repeat 3
# weights: 103
initial value 99.565103
final value 93.358333
converged
Fitting Repeat 4
# weights: 103
initial value 96.115746
iter 10 value 94.054390
iter 20 value 94.052913
iter 30 value 93.755767
final value 93.357246
converged
Fitting Repeat 5
# weights: 103
initial value 96.545866
iter 10 value 93.330198
iter 20 value 93.328900
final value 93.328610
converged
Fitting Repeat 1
# weights: 305
initial value 105.846292
iter 10 value 93.333907
iter 20 value 93.333106
iter 30 value 93.116650
iter 40 value 93.111339
iter 40 value 93.111339
final value 93.111339
converged
Fitting Repeat 2
# weights: 305
initial value 103.513694
iter 10 value 94.056795
iter 20 value 94.052920
final value 94.052919
converged
Fitting Repeat 3
# weights: 305
initial value 101.702076
iter 10 value 94.057247
iter 20 value 93.977024
iter 30 value 93.329534
final value 93.329527
converged
Fitting Repeat 4
# weights: 305
initial value 109.706252
iter 10 value 92.807810
iter 20 value 83.725632
iter 30 value 80.515745
iter 40 value 80.171792
iter 50 value 80.010968
iter 60 value 79.773717
iter 70 value 79.768204
iter 80 value 79.757338
iter 90 value 79.757124
iter 100 value 79.754511
final value 79.754511
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 102.183392
iter 10 value 94.057810
iter 20 value 93.606952
iter 30 value 93.143419
final value 93.111387
converged
Fitting Repeat 1
# weights: 507
initial value 107.180192
iter 10 value 93.336955
iter 20 value 93.330566
iter 30 value 93.154556
iter 40 value 82.529156
iter 50 value 82.051626
iter 60 value 78.833517
iter 70 value 78.717901
iter 80 value 78.703462
iter 90 value 78.703372
iter 100 value 78.636312
final value 78.636312
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 91.542995
iter 10 value 83.594789
iter 20 value 81.720409
iter 30 value 81.126507
iter 40 value 80.910536
iter 50 value 80.908829
iter 60 value 80.039567
iter 70 value 79.704135
iter 80 value 79.703012
iter 90 value 79.701969
final value 79.701960
converged
Fitting Repeat 3
# weights: 507
initial value 129.796736
iter 10 value 94.061015
iter 20 value 94.054591
iter 30 value 92.898235
iter 40 value 90.080657
iter 50 value 81.752369
iter 60 value 81.658232
iter 70 value 78.829681
iter 80 value 78.587828
iter 90 value 78.568539
iter 100 value 78.567929
final value 78.567929
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 102.671515
iter 10 value 94.060396
iter 20 value 91.556891
iter 30 value 91.508383
iter 40 value 90.927377
iter 50 value 90.822833
iter 60 value 90.822407
iter 60 value 90.822406
iter 60 value 90.822406
final value 90.822406
converged
Fitting Repeat 5
# weights: 507
initial value 98.456793
iter 10 value 88.443150
iter 20 value 82.379825
iter 30 value 81.648200
iter 40 value 81.376071
iter 50 value 79.833119
iter 60 value 79.811700
iter 70 value 79.650951
iter 80 value 79.496201
iter 90 value 79.493915
iter 100 value 79.441736
final value 79.441736
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 129.033535
iter 10 value 117.266195
iter 20 value 107.939143
iter 30 value 106.544801
iter 40 value 105.156354
iter 50 value 104.673116
iter 60 value 103.616399
iter 70 value 102.517386
iter 80 value 102.139603
iter 90 value 101.611522
iter 100 value 101.110489
final value 101.110489
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 135.964789
iter 10 value 118.548266
iter 20 value 114.470738
iter 30 value 106.183997
iter 40 value 105.608978
iter 50 value 105.297217
iter 60 value 104.306931
iter 70 value 103.178765
iter 80 value 102.799892
iter 90 value 102.353402
iter 100 value 102.029357
final value 102.029357
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 139.354375
iter 10 value 116.956271
iter 20 value 108.350488
iter 30 value 105.722205
iter 40 value 105.158102
iter 50 value 104.021352
iter 60 value 102.547099
iter 70 value 102.168723
iter 80 value 101.430332
iter 90 value 101.141009
iter 100 value 100.863303
final value 100.863303
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 128.792045
iter 10 value 117.702322
iter 20 value 110.394686
iter 30 value 108.522543
iter 40 value 103.672507
iter 50 value 102.167894
iter 60 value 101.361235
iter 70 value 101.137574
iter 80 value 101.020033
iter 90 value 101.007201
iter 100 value 100.965999
final value 100.965999
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 147.232538
iter 10 value 117.327984
iter 20 value 107.198607
iter 30 value 103.542832
iter 40 value 102.934880
iter 50 value 102.107468
iter 60 value 101.759549
iter 70 value 101.564218
iter 80 value 101.168893
iter 90 value 101.151819
iter 100 value 101.124682
final value 101.124682
stopped after 100 iterations
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Tue May 9 18:44:53 2023
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
54.666 1.418 66.855
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 37.190 | 0.367 | 37.563 | |
| FreqInteractors | 0.288 | 0.012 | 0.300 | |
| calculateAAC | 0.044 | 0.004 | 0.049 | |
| calculateAutocor | 0.714 | 0.016 | 0.731 | |
| calculateCTDC | 0.097 | 0.000 | 0.096 | |
| calculateCTDD | 0.801 | 0.004 | 0.804 | |
| calculateCTDT | 0.263 | 0.000 | 0.263 | |
| calculateCTriad | 0.452 | 0.004 | 0.456 | |
| calculateDC | 0.134 | 0.004 | 0.138 | |
| calculateF | 0.376 | 0.000 | 0.376 | |
| calculateKSAAP | 0.140 | 0.004 | 0.145 | |
| calculateQD_Sm | 2.199 | 0.024 | 2.224 | |
| calculateTC | 2.254 | 0.052 | 2.307 | |
| calculateTC_Sm | 0.351 | 0.016 | 0.367 | |
| corr_plot | 37.351 | 0.392 | 37.748 | |
| enrichfindP | 0.426 | 0.036 | 14.953 | |
| enrichfind_hp | 0.046 | 0.008 | 1.205 | |
| enrichplot | 0.367 | 0.016 | 0.383 | |
| filter_missing_values | 0.001 | 0.000 | 0.002 | |
| getFASTA | 0.749 | 0.013 | 9.913 | |
| getHPI | 0.001 | 0.000 | 0.001 | |
| get_negativePPI | 0.002 | 0.000 | 0.003 | |
| get_positivePPI | 0.000 | 0.000 | 0.001 | |
| impute_missing_data | 0.000 | 0.002 | 0.002 | |
| plotPPI | 0.079 | 0.005 | 0.083 | |
| pred_ensembel | 18.340 | 0.321 | 16.290 | |
| var_imp | 39.069 | 0.409 | 39.480 | |