| Back to Build/check report for BioC 3.18: simplified long |
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This page was generated on 2023-05-10 10:04:36 -0000 (Wed, 10 May 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-03-12 r83975) -- "Unsuffered Consequences" | 6211 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the OCplus package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OCplus.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 1380/2194 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| OCplus 1.75.0 (landing page) Alexander Ploner
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
| Package: OCplus |
| Version: 1.75.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:OCplus.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings OCplus_1.75.0.tar.gz |
| StartedAt: 2023-05-09 23:17:04 -0000 (Tue, 09 May 2023) |
| EndedAt: 2023-05-09 23:19:31 -0000 (Tue, 09 May 2023) |
| EllapsedTime: 146.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: OCplus.Rcheck |
| Warnings: 0 |
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### Running command:
###
### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:OCplus.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings OCplus_1.75.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/OCplus.Rcheck’
* using R Under development (unstable) (2023-03-12 r83975)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.2 LTS
* using session charset: UTF-8
* checking for file ‘OCplus/DESCRIPTION’ ... OK
* this is package ‘OCplus’ version ‘1.75.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘OCplus’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
samplesize 6.357 0.32 7.068
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘OCplus.Rnw’... OK
OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
OCplus.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL OCplus ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library’ * installing *source* package ‘OCplus’ ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OCplus)
OCplus.Rcheck/OCplus-Ex.timings
| name | user | system | elapsed | |
| EOC | 0.503 | 0.016 | 0.536 | |
| FDR | 0.003 | 0.000 | 0.003 | |
| MAsim.smyth | 1.244 | 0.025 | 1.271 | |
| OCshow | 2.369 | 0.021 | 2.528 | |
| TOC | 0.439 | 0.036 | 0.475 | |
| average.fdr | 2.313 | 0.032 | 3.574 | |
| fdr1d | 1.092 | 0.004 | 1.148 | |
| fdr2d | 1.041 | 0.022 | 1.062 | |
| plot.FDR.result | 1.045 | 0.021 | 1.066 | |
| plot.fdr1d.result | 1.295 | 0.012 | 1.307 | |
| plot.fdr2d.result | 1.604 | 0.016 | 1.622 | |
| samplesize | 6.357 | 0.320 | 7.068 | |
| smooth1d | 0.034 | 0.004 | 0.037 | |
| summary.fdr.result | 0.931 | 0.004 | 0.935 | |
| tMixture | 3.378 | 0.248 | 3.748 | |