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This page was generated on 2023-05-10 10:04:36 -0000 (Wed, 10 May 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-03-12 r83975) -- "Unsuffered Consequences" | 6211 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the OmnipathR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OmnipathR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 1399/2194 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| OmnipathR 3.9.0 (landing page) Denes Turei
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
| Package: OmnipathR |
| Version: 3.9.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL OmnipathR |
| StartedAt: 2023-05-08 21:56:41 -0000 (Mon, 08 May 2023) |
| EndedAt: 2023-05-08 21:56:57 -0000 (Mon, 08 May 2023) |
| EllapsedTime: 15.7 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL OmnipathR ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library’ * installing *source* package ‘OmnipathR’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location [2023-05-08 21:56:54] [TRACE] [OmnipathR] Reading JSON from `/home/biocbuild/.cache/OmnipathR/cache.json` (encoding: UTF-8). [2023-05-08 21:56:54] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-05-08 21:56:54] [INFO] [OmnipathR] Initialized cache: `/home/biocbuild/.cache/OmnipathR`. [2023-05-08 21:56:54] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2023-05-08 21:56:54] [TRACE] [OmnipathR] Cache is at `/home/biocbuild/.cache/OmnipathR`. [2023-05-08 21:56:54] [TRACE] [OmnipathR] Contains 16 files. [2023-05-08 21:56:54] [TRACE] [OmnipathR] Cache is locked: FALSE. [2023-05-08 21:56:54] [TRACE] [OmnipathR] Reading JSON from `/home/biocbuild/.cache/OmnipathR/cache.json` (encoding: UTF-8). [2023-05-08 21:56:54] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-05-08 21:56:54] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/biocbuild/.cache/OmnipathR`. [2023-05-08 21:56:54] [TRACE] [OmnipathR] Pandoc version: `2.9.2.1`. [2023-05-08 21:56:54] [TRACE] [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/00LOCK-OmnipathR/00new/OmnipathR/db/db_def.json` (encoding: UTF-8). [2023-05-08 21:56:54] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-05-08 21:56:54] [TRACE] [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/00LOCK-OmnipathR/00new/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2023-05-08 21:56:54] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-05-08 21:56:54] [TRACE] [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/00LOCK-OmnipathR/00new/OmnipathR/internal/urls.json` (encoding: UTF-8). [2023-05-08 21:56:54] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-05-08 21:56:54] [TRACE] [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/00LOCK-OmnipathR/00new/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2023-05-08 21:56:54] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-05-08 21:56:54] [TRACE] [OmnipathR] Cache locked: FALSE ** testing if installed package can be loaded from final location [2023-05-08 21:56:56] [TRACE] [OmnipathR] Reading JSON from `/home/biocbuild/.cache/OmnipathR/cache.json` (encoding: UTF-8). [2023-05-08 21:56:56] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-05-08 21:56:56] [INFO] [OmnipathR] Initialized cache: `/home/biocbuild/.cache/OmnipathR`. [2023-05-08 21:56:56] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2023-05-08 21:56:56] [TRACE] [OmnipathR] Cache is at `/home/biocbuild/.cache/OmnipathR`. [2023-05-08 21:56:56] [TRACE] [OmnipathR] Contains 1 files. [2023-05-08 21:56:56] [TRACE] [OmnipathR] Cache is locked: FALSE. [2023-05-08 21:56:56] [TRACE] [OmnipathR] Reading JSON from `/home/biocbuild/.cache/OmnipathR/cache.json` (encoding: UTF-8). [2023-05-08 21:56:56] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-05-08 21:56:56] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/biocbuild/.cache/OmnipathR`. [2023-05-08 21:56:56] [TRACE] [OmnipathR] Pandoc version: `2.9.2.1`. [2023-05-08 21:56:56] [TRACE] [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/OmnipathR/db/db_def.json` (encoding: UTF-8). [2023-05-08 21:56:56] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-05-08 21:56:56] [TRACE] [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2023-05-08 21:56:56] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-05-08 21:56:56] [TRACE] [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/OmnipathR/internal/urls.json` (encoding: UTF-8). [2023-05-08 21:56:56] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-05-08 21:56:56] [TRACE] [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2023-05-08 21:56:56] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-05-08 21:56:56] [TRACE] [OmnipathR] Cache locked: FALSE ** testing if installed package keeps a record of temporary installation path * DONE (OmnipathR)