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This page was generated on 2023-05-10 10:04:36 -0000 (Wed, 10 May 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-03-12 r83975) -- "Unsuffered Consequences" 6211
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CHECK results for OpenStats on kunpeng1


To the developers/maintainers of the OpenStats package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OpenStats.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 1411/2194HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
OpenStats 1.13.0  (landing page)
Hamed Haseli Mashhadi
Snapshot Date: 2023-05-08 19:11:19 -0000 (Mon, 08 May 2023)
git_url: https://git.bioconductor.org/packages/OpenStats
git_branch: devel
git_last_commit: cbaa154
git_last_commit_date: 2023-04-25 15:17:33 -0000 (Tue, 25 Apr 2023)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    OK    OK  

Summary

Package: OpenStats
Version: 1.13.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:OpenStats.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings OpenStats_1.13.0.tar.gz
StartedAt: 2023-05-09 23:37:26 -0000 (Tue, 09 May 2023)
EndedAt: 2023-05-09 23:39:36 -0000 (Tue, 09 May 2023)
EllapsedTime: 130.2 seconds
RetCode: 0
Status:   OK  
CheckDir: OpenStats.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:OpenStats.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings OpenStats_1.13.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/OpenStats.Rcheck’
* using R Under development (unstable) (2023-03-12 r83975)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.2 LTS
* using session charset: UTF-8
* checking for file ‘OpenStats/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘OpenStats’ version ‘1.13.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘OpenStats’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) OpenStatsAnalysis.Rd:108: Escaped LaTeX specials: \& \& \& \& \&
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘OpenStats.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.17-bioc/meat/OpenStats.Rcheck/00check.log’
for details.



Installation output

OpenStats.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL OpenStats
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library’
* installing *source* package ‘OpenStats’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (OpenStats)

Tests output


Example timings

OpenStats.Rcheck/OpenStats-Ex.timings

nameusersystemelapsed
OpenStatsAnalysis2.2970.0802.378
OpenStatsBuilder0.0010.0000.000
OpenStatsComplementarySplit1.6120.0121.624
OpenStatsList1.1130.1051.439
OpenStatsReport2.4390.0842.524
plot.OpenStats0.5450.0800.650
plot.OpenStatsComplementarySplit2.1970.0632.261
plot.OpenStatsFE0.0890.0050.093
plot.OpenStatsMM0.6720.0040.675
plot.OpenStatsRR0.3680.0070.375
print.OpenStats0.5320.0470.605
print.OpenStatsComplementarySplit1.8070.0801.887
print.OpenStatsFE0.0920.0000.094
print.OpenStatsMM0.6590.0160.675
print.OpenStatsRR0.3390.0040.343
summary.OpenStats0.5630.0290.617
summary.OpenStatsComplementarySplit1.8020.0721.873
summary.OpenStatsFE0.0840.0040.087
summary.OpenStatsMM0.6620.0200.682
summary.OpenStatsRR0.3760.0120.389