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This page was generated on 2023-05-10 10:04:38 -0000 (Wed, 10 May 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-03-12 r83975) -- "Unsuffered Consequences" 6211
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BUILD results for QuasR on kunpeng1


To the developers/maintainers of the QuasR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/QuasR.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 1580/2194HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
QuasR 1.41.0  (landing page)
Michael Stadler
Snapshot Date: 2023-05-08 19:11:19 -0000 (Mon, 08 May 2023)
git_url: https://git.bioconductor.org/packages/QuasR
git_branch: devel
git_last_commit: 91098ce
git_last_commit_date: 2023-04-25 14:25:14 -0000 (Tue, 25 Apr 2023)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    ERROR  skipped

Summary

Package: QuasR
Version: 1.41.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data QuasR
StartedAt: 2023-05-09 05:03:03 -0000 (Tue, 09 May 2023)
EndedAt: 2023-05-09 05:06:13 -0000 (Tue, 09 May 2023)
EllapsedTime: 190.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data QuasR
###
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* checking for file ‘QuasR/DESCRIPTION’ ... OK
* preparing ‘QuasR’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘QuasR.Rmd’ using rmarkdown
Quitting from lines 902-910 (QuasR.Rmd) 
Error: processing vignette 'QuasR.Rmd' failed with diagnostics:
The Rhisat2 package is required for alignments, but not installed.
Install it using BiocManager::install("Rhisat2")
--- failed re-building ‘QuasR.Rmd’

SUMMARY: processing the following file failed:
  ‘QuasR.Rmd’

Error: Vignette re-building failed.
Execution halted