| Back to Build/check report for BioC 3.18: simplified long |
|
This page was generated on 2023-05-10 10:04:38 -0000 (Wed, 10 May 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-03-12 r83975) -- "Unsuffered Consequences" | 6211 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the Rarr package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Rarr.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 1600/2194 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Rarr 1.1.0 (landing page) Mike Smith
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | ERROR | ERROR | skipped | |||||||||
| Package: Rarr |
| Version: 1.1.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data Rarr |
| StartedAt: 2023-05-09 05:07:32 -0000 (Tue, 09 May 2023) |
| EndedAt: 2023-05-09 05:07:35 -0000 (Tue, 09 May 2023) |
| EllapsedTime: 3.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data Rarr
###
##############################################################################
##############################################################################
* checking for file ‘Rarr/DESCRIPTION’ ... OK
* preparing ‘Rarr’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
-----------------------------------
* installing *source* package ‘Rarr’ ...
** using staged installation
R was not built as a library
configure: creating ./config.status
config.status: creating src/Makevars
x86_CPU=false
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking whether C compiler accepts -msse2... no
checking whether C compiler accepts -mavx2... no
configure: creating ./config.status
config.status: creating src/Makevars
config.status: creating src/compression_tools/blosc/lib/blosc-1.20.1/Makefile
config.status: creating src/compression_tools/blosc/Makefile
** libs
using C compiler: ‘gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
make -C compression_tools/blosc
make[1]: Entering directory '/tmp/Rtmp4geVKE/Rbuild14101a72d2b563/Rarr/src/compression_tools/blosc'
make -C lib/snappy-1.1.1
make[2]: Entering directory '/tmp/Rtmp4geVKE/Rbuild14101a72d2b563/Rarr/src/compression_tools/blosc/lib/snappy-1.1.1'
g++ -std=gnu++17 -g -O2 -fPIC -I/usr/local/include -DUSING_R -c snappy.cc
snappy.cc:39:10: fatal error: R_ext/Error.h: No such file or directory
39 | #include <R_ext/Error.h>
| ^~~~~~~~~~~~~~~
compilation terminated.
make[2]: *** [Makefile:13: snappy.o] Error 1
make[2]: Leaving directory '/tmp/Rtmp4geVKE/Rbuild14101a72d2b563/Rarr/src/compression_tools/blosc/lib/snappy-1.1.1'
make[1]: *** [Makefile:44: lib/snappy-1.1.1] Error 2
make[1]: Leaving directory '/tmp/Rtmp4geVKE/Rbuild14101a72d2b563/Rarr/src/compression_tools/blosc'
make: *** [Makevars:19: compression_tools/blosc/libblosc.a] Error 2
ERROR: compilation failed for package ‘Rarr’
* removing ‘/tmp/Rtmp4geVKE/Rinst14101accd392d/Rarr’
-----------------------------------
ERROR: package installation failed