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This page was generated on 2023-05-10 10:04:41 -0000 (Wed, 10 May 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-03-12 r83975) -- "Unsuffered Consequences" | 6211 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the SparseArray package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SparseArray.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 1932/2194 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SparseArray 1.1.2 (landing page) Hervé Pagès
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
| Package: SparseArray |
| Version: 1.1.2 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL SparseArray |
| StartedAt: 2023-05-08 21:27:55 -0000 (Mon, 08 May 2023) |
| EndedAt: 2023-05-08 21:28:31 -0000 (Mon, 08 May 2023) |
| EllapsedTime: 35.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL SparseArray
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* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library’
* installing *source* package ‘SparseArray’ ...
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
gcc -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/S4Vectors/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/IRanges/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/XVector/include' -I/usr/local/include -fPIC -g -O2 -c ExtendableJaggedArray.c -o ExtendableJaggedArray.o
In file included from ExtendableJaggedArray.c:8:
leaf_vector_utils.h:23:1: warning: braces around scalar initializer
23 | static const Rcomplex Rcomplex0 = {{0.0, 0.0}};
| ^~~~~~
leaf_vector_utils.h:23:1: note: (near initialization for ‘Rcomplex0.r’)
leaf_vector_utils.h:23:42: warning: excess elements in scalar initializer
23 | static const Rcomplex Rcomplex0 = {{0.0, 0.0}};
| ^~~
leaf_vector_utils.h:23:42: note: (near initialization for ‘Rcomplex0.r’)
gcc -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/S4Vectors/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/IRanges/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/XVector/include' -I/usr/local/include -fPIC -g -O2 -c IRanges_stubs.c -o IRanges_stubs.o
gcc -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/S4Vectors/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/IRanges/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/XVector/include' -I/usr/local/include -fPIC -g -O2 -c R_init_SparseArray.c -o R_init_SparseArray.o
gcc -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/S4Vectors/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/IRanges/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/XVector/include' -I/usr/local/include -fPIC -g -O2 -c Rvector_summarization.c -o Rvector_summarization.o
gcc -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/S4Vectors/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/IRanges/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/XVector/include' -I/usr/local/include -fPIC -g -O2 -c Rvector_utils.c -o Rvector_utils.o
gcc -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/S4Vectors/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/IRanges/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/XVector/include' -I/usr/local/include -fPIC -g -O2 -c S4Vectors_stubs.c -o S4Vectors_stubs.o
gcc -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/S4Vectors/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/IRanges/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/XVector/include' -I/usr/local/include -fPIC -g -O2 -c SVT_SparseArray_class.c -o SVT_SparseArray_class.o
In file included from SVT_SparseArray_class.c:10:
leaf_vector_utils.h:23:1: warning: braces around scalar initializer
23 | static const Rcomplex Rcomplex0 = {{0.0, 0.0}};
| ^~~~~~
leaf_vector_utils.h:23:1: note: (near initialization for ‘Rcomplex0.r’)
leaf_vector_utils.h:23:42: warning: excess elements in scalar initializer
23 | static const Rcomplex Rcomplex0 = {{0.0, 0.0}};
| ^~~
leaf_vector_utils.h:23:42: note: (near initialization for ‘Rcomplex0.r’)
gcc -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/S4Vectors/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/IRanges/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/XVector/include' -I/usr/local/include -fPIC -g -O2 -c SparseArray_Complex_methods.c -o SparseArray_Complex_methods.o
In file included from SparseArray_Complex_methods.c:6:
leaf_vector_utils.h:23:1: warning: braces around scalar initializer
23 | static const Rcomplex Rcomplex0 = {{0.0, 0.0}};
| ^~~~~~
leaf_vector_utils.h:23:1: note: (near initialization for ‘Rcomplex0.r’)
leaf_vector_utils.h:23:42: warning: excess elements in scalar initializer
23 | static const Rcomplex Rcomplex0 = {{0.0, 0.0}};
| ^~~
leaf_vector_utils.h:23:42: note: (near initialization for ‘Rcomplex0.r’)
gcc -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/S4Vectors/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/IRanges/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/XVector/include' -I/usr/local/include -fPIC -g -O2 -c SparseArray_Math_methods.c -o SparseArray_Math_methods.o
In file included from SparseArray_Math_methods.c:6:
leaf_vector_utils.h:23:1: warning: braces around scalar initializer
23 | static const Rcomplex Rcomplex0 = {{0.0, 0.0}};
| ^~~~~~
leaf_vector_utils.h:23:1: note: (near initialization for ‘Rcomplex0.r’)
leaf_vector_utils.h:23:42: warning: excess elements in scalar initializer
23 | static const Rcomplex Rcomplex0 = {{0.0, 0.0}};
| ^~~
leaf_vector_utils.h:23:42: note: (near initialization for ‘Rcomplex0.r’)
gcc -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/S4Vectors/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/IRanges/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/XVector/include' -I/usr/local/include -fPIC -g -O2 -c SparseArray_Ops_methods.c -o SparseArray_Ops_methods.o
gcc -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/S4Vectors/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/IRanges/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/XVector/include' -I/usr/local/include -fPIC -g -O2 -c SparseArray_class.c -o SparseArray_class.o
gcc -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/S4Vectors/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/IRanges/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/XVector/include' -I/usr/local/include -fPIC -g -O2 -c SparseArray_combine.c -o SparseArray_combine.o
In file included from SparseArray_combine.c:7:
leaf_vector_utils.h:23:1: warning: braces around scalar initializer
23 | static const Rcomplex Rcomplex0 = {{0.0, 0.0}};
| ^~~~~~
leaf_vector_utils.h:23:1: note: (near initialization for ‘Rcomplex0.r’)
leaf_vector_utils.h:23:42: warning: excess elements in scalar initializer
23 | static const Rcomplex Rcomplex0 = {{0.0, 0.0}};
| ^~~
leaf_vector_utils.h:23:42: note: (near initialization for ‘Rcomplex0.r’)
gcc -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/S4Vectors/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/IRanges/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/XVector/include' -I/usr/local/include -fPIC -g -O2 -c SparseArray_subassignment.c -o SparseArray_subassignment.o
In file included from SparseArray_subassignment.c:9:
leaf_vector_utils.h:23:1: warning: braces around scalar initializer
23 | static const Rcomplex Rcomplex0 = {{0.0, 0.0}};
| ^~~~~~
leaf_vector_utils.h:23:1: note: (near initialization for ‘Rcomplex0.r’)
leaf_vector_utils.h:23:42: warning: excess elements in scalar initializer
23 | static const Rcomplex Rcomplex0 = {{0.0, 0.0}};
| ^~~
leaf_vector_utils.h:23:42: note: (near initialization for ‘Rcomplex0.r’)
gcc -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/S4Vectors/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/IRanges/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/XVector/include' -I/usr/local/include -fPIC -g -O2 -c SparseArray_subsetting.c -o SparseArray_subsetting.o
In file included from SparseArray_subsetting.c:7:
leaf_vector_utils.h:23:1: warning: braces around scalar initializer
23 | static const Rcomplex Rcomplex0 = {{0.0, 0.0}};
| ^~~~~~
leaf_vector_utils.h:23:1: note: (near initialization for ‘Rcomplex0.r’)
leaf_vector_utils.h:23:42: warning: excess elements in scalar initializer
23 | static const Rcomplex Rcomplex0 = {{0.0, 0.0}};
| ^~~
leaf_vector_utils.h:23:42: note: (near initialization for ‘Rcomplex0.r’)
gcc -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/S4Vectors/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/IRanges/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/XVector/include' -I/usr/local/include -fPIC -g -O2 -c SparseArray_summarization.c -o SparseArray_summarization.o
In file included from SparseArray_summarization.c:7:
leaf_vector_utils.h:23:1: warning: braces around scalar initializer
23 | static const Rcomplex Rcomplex0 = {{0.0, 0.0}};
| ^~~~~~
leaf_vector_utils.h:23:1: note: (near initialization for ‘Rcomplex0.r’)
leaf_vector_utils.h:23:42: warning: excess elements in scalar initializer
23 | static const Rcomplex Rcomplex0 = {{0.0, 0.0}};
| ^~~
leaf_vector_utils.h:23:42: note: (near initialization for ‘Rcomplex0.r’)
gcc -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/S4Vectors/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/IRanges/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/XVector/include' -I/usr/local/include -fPIC -g -O2 -c SparseMatrix_mult.c -o SparseMatrix_mult.o
In file included from SparseMatrix_mult.c:7:
leaf_vector_utils.h:23:1: warning: braces around scalar initializer
23 | static const Rcomplex Rcomplex0 = {{0.0, 0.0}};
| ^~~~~~
leaf_vector_utils.h:23:1: note: (near initialization for ‘Rcomplex0.r’)
leaf_vector_utils.h:23:42: warning: excess elements in scalar initializer
23 | static const Rcomplex Rcomplex0 = {{0.0, 0.0}};
| ^~~
leaf_vector_utils.h:23:42: note: (near initialization for ‘Rcomplex0.r’)
gcc -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/S4Vectors/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/IRanges/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/XVector/include' -I/usr/local/include -fPIC -g -O2 -c XVector_stubs.c -o XVector_stubs.o
gcc -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/S4Vectors/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/IRanges/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/XVector/include' -I/usr/local/include -fPIC -g -O2 -c coerceVector2.c -o coerceVector2.o
gcc -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/S4Vectors/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/IRanges/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/XVector/include' -I/usr/local/include -fPIC -g -O2 -c leaf_vector_Arith.c -o leaf_vector_Arith.o
In file included from leaf_vector_Arith.c:6:
leaf_vector_utils.h:23:1: warning: braces around scalar initializer
23 | static const Rcomplex Rcomplex0 = {{0.0, 0.0}};
| ^~~~~~
leaf_vector_utils.h:23:1: note: (near initialization for ‘Rcomplex0.r’)
leaf_vector_utils.h:23:42: warning: excess elements in scalar initializer
23 | static const Rcomplex Rcomplex0 = {{0.0, 0.0}};
| ^~~
leaf_vector_utils.h:23:42: note: (near initialization for ‘Rcomplex0.r’)
gcc -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/S4Vectors/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/IRanges/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/XVector/include' -I/usr/local/include -fPIC -g -O2 -c leaf_vector_Compare.c -o leaf_vector_Compare.o
In file included from leaf_vector_Compare.c:6:
leaf_vector_utils.h:23:1: warning: braces around scalar initializer
23 | static const Rcomplex Rcomplex0 = {{0.0, 0.0}};
| ^~~~~~
leaf_vector_utils.h:23:1: note: (near initialization for ‘Rcomplex0.r’)
leaf_vector_utils.h:23:42: warning: excess elements in scalar initializer
23 | static const Rcomplex Rcomplex0 = {{0.0, 0.0}};
| ^~~
leaf_vector_utils.h:23:42: note: (near initialization for ‘Rcomplex0.r’)
gcc -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/S4Vectors/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/IRanges/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/XVector/include' -I/usr/local/include -fPIC -g -O2 -c leaf_vector_Logic.c -o leaf_vector_Logic.o
In file included from leaf_vector_Logic.c:6:
leaf_vector_utils.h:23:1: warning: braces around scalar initializer
23 | static const Rcomplex Rcomplex0 = {{0.0, 0.0}};
| ^~~~~~
leaf_vector_utils.h:23:1: note: (near initialization for ‘Rcomplex0.r’)
leaf_vector_utils.h:23:42: warning: excess elements in scalar initializer
23 | static const Rcomplex Rcomplex0 = {{0.0, 0.0}};
| ^~~
leaf_vector_utils.h:23:42: note: (near initialization for ‘Rcomplex0.r’)
gcc -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/S4Vectors/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/IRanges/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/XVector/include' -I/usr/local/include -fPIC -g -O2 -c leaf_vector_dotprod.c -o leaf_vector_dotprod.o
In file included from leaf_vector_dotprod.c:6:
leaf_vector_utils.h:23:1: warning: braces around scalar initializer
23 | static const Rcomplex Rcomplex0 = {{0.0, 0.0}};
| ^~~~~~
leaf_vector_utils.h:23:1: note: (near initialization for ‘Rcomplex0.r’)
leaf_vector_utils.h:23:42: warning: excess elements in scalar initializer
23 | static const Rcomplex Rcomplex0 = {{0.0, 0.0}};
| ^~~
leaf_vector_utils.h:23:42: note: (near initialization for ‘Rcomplex0.r’)
gcc -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/S4Vectors/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/IRanges/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/XVector/include' -I/usr/local/include -fPIC -g -O2 -c leaf_vector_utils.c -o leaf_vector_utils.o
In file included from leaf_vector_utils.c:4:
leaf_vector_utils.h:23:1: warning: braces around scalar initializer
23 | static const Rcomplex Rcomplex0 = {{0.0, 0.0}};
| ^~~~~~
leaf_vector_utils.h:23:1: note: (near initialization for ‘Rcomplex0.r’)
leaf_vector_utils.h:23:42: warning: excess elements in scalar initializer
23 | static const Rcomplex Rcomplex0 = {{0.0, 0.0}};
| ^~~
leaf_vector_utils.h:23:42: note: (near initialization for ‘Rcomplex0.r’)
gcc -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/S4Vectors/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/IRanges/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/XVector/include' -I/usr/local/include -fPIC -g -O2 -c matrixStats_methods.c -o matrixStats_methods.o
gcc -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/S4Vectors/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/IRanges/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/XVector/include' -I/usr/local/include -fPIC -g -O2 -c randomSparseArray.c -o randomSparseArray.o
In file included from randomSparseArray.c:6:
leaf_vector_utils.h:23:1: warning: braces around scalar initializer
23 | static const Rcomplex Rcomplex0 = {{0.0, 0.0}};
| ^~~~~~
leaf_vector_utils.h:23:1: note: (near initialization for ‘Rcomplex0.r’)
leaf_vector_utils.h:23:42: warning: excess elements in scalar initializer
23 | static const Rcomplex Rcomplex0 = {{0.0, 0.0}};
| ^~~
leaf_vector_utils.h:23:42: note: (near initialization for ‘Rcomplex0.r’)
gcc -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/S4Vectors/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/IRanges/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/XVector/include' -I/usr/local/include -fPIC -g -O2 -c readSparseCSV.c -o readSparseCSV.o
In file included from readSparseCSV.c:10:
leaf_vector_utils.h:23:1: warning: braces around scalar initializer
23 | static const Rcomplex Rcomplex0 = {{0.0, 0.0}};
| ^~~~~~
leaf_vector_utils.h:23:1: note: (near initialization for ‘Rcomplex0.r’)
leaf_vector_utils.h:23:42: warning: excess elements in scalar initializer
23 | static const Rcomplex Rcomplex0 = {{0.0, 0.0}};
| ^~~
leaf_vector_utils.h:23:42: note: (near initialization for ‘Rcomplex0.r’)
gcc -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/S4Vectors/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/IRanges/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/XVector/include' -I/usr/local/include -fPIC -g -O2 -c rowsum_methods.c -o rowsum_methods.o
In file included from rowsum_methods.c:9:
leaf_vector_utils.h:23:1: warning: braces around scalar initializer
23 | static const Rcomplex Rcomplex0 = {{0.0, 0.0}};
| ^~~~~~
leaf_vector_utils.h:23:1: note: (near initialization for ‘Rcomplex0.r’)
leaf_vector_utils.h:23:42: warning: excess elements in scalar initializer
23 | static const Rcomplex Rcomplex0 = {{0.0, 0.0}};
| ^~~
leaf_vector_utils.h:23:42: note: (near initialization for ‘Rcomplex0.r’)
gcc -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/S4Vectors/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/IRanges/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/XVector/include' -I/usr/local/include -fPIC -g -O2 -c sparseMatrix_utils.c -o sparseMatrix_utils.o
gcc -I"/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/S4Vectors/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/IRanges/include' -I'/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/XVector/include' -I/usr/local/include -fPIC -g -O2 -c test.c -o test.o
gcc -shared -L/usr/local/lib -o SparseArray.so ExtendableJaggedArray.o IRanges_stubs.o R_init_SparseArray.o Rvector_summarization.o Rvector_utils.o S4Vectors_stubs.o SVT_SparseArray_class.o SparseArray_Complex_methods.o SparseArray_Math_methods.o SparseArray_Ops_methods.o SparseArray_class.o SparseArray_combine.o SparseArray_subassignment.o SparseArray_subsetting.o SparseArray_summarization.o SparseMatrix_mult.o XVector_stubs.o coerceVector2.o leaf_vector_Arith.o leaf_vector_Compare.o leaf_vector_Logic.o leaf_vector_dotprod.o leaf_vector_utils.o matrixStats_methods.o randomSparseArray.o readSparseCSV.o rowsum_methods.o sparseMatrix_utils.o test.o
installing to /home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/00LOCK-SparseArray/00new/SparseArray/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SparseArray)