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This page was generated on 2023-05-10 10:04:31 -0000 (Wed, 10 May 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-03-12 r83975) -- "Unsuffered Consequences" 6211
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for fobitools on kunpeng1


To the developers/maintainers of the fobitools package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/fobitools.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 726/2194HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
fobitools 1.9.0  (landing page)
Pol Castellano-Escuder
Snapshot Date: 2023-05-08 19:11:19 -0000 (Mon, 08 May 2023)
git_url: https://git.bioconductor.org/packages/fobitools
git_branch: devel
git_last_commit: d0fc06e
git_last_commit_date: 2023-04-25 15:26:32 -0000 (Tue, 25 Apr 2023)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    ERROR  skipped

Summary

Package: fobitools
Version: 1.9.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data fobitools
StartedAt: 2023-05-09 01:52:16 -0000 (Tue, 09 May 2023)
EndedAt: 2023-05-09 01:53:37 -0000 (Tue, 09 May 2023)
EllapsedTime: 80.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data fobitools
###
##############################################################################
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* checking for file ‘fobitools/DESCRIPTION’ ... OK
* preparing ‘fobitools’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Dietary_data_annotation.Rmd’ using rmarkdown
Warning: ggrepel: 13 unlabeled data points (too many overlaps). Consider increasing max.overlaps
--- finished re-building ‘Dietary_data_annotation.Rmd’

--- re-building ‘MW_ST000291_enrichment.Rmd’ using rmarkdown
Quitting from lines 80-91 (MW_ST000291_enrichment.Rmd) 
Error: processing vignette 'MW_ST000291_enrichment.Rmd' failed with diagnostics:
Timeout was reached: [www.metabolomicsworkbench.org] Resolving timed out after 10000 milliseconds
--- failed re-building ‘MW_ST000291_enrichment.Rmd’

--- re-building ‘MW_ST000629_enrichment.Rmd’ using rmarkdown
Warning: ggrepel: 7 unlabeled data points (too many overlaps). Consider increasing max.overlaps
Warning: ggrepel: 2 unlabeled data points (too many overlaps). Consider increasing max.overlaps
--- finished re-building ‘MW_ST000629_enrichment.Rmd’

--- re-building ‘food_enrichment_analysis.Rmd’ using rmarkdown
Warning: ggrepel: 101 unlabeled data points (too many overlaps). Consider increasing max.overlaps
--- finished re-building ‘food_enrichment_analysis.Rmd’

SUMMARY: processing the following file failed:
  ‘MW_ST000291_enrichment.Rmd’

Error: Vignette re-building failed.
Execution halted