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This page was generated on 2023-05-10 10:04:32 -0000 (Wed, 10 May 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-03-12 r83975) -- "Unsuffered Consequences" 6211
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for gespeR on kunpeng1


To the developers/maintainers of the gespeR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/gespeR.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 813/2194HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
gespeR 1.33.0  (landing page)
Fabian Schmich
Snapshot Date: 2023-05-08 19:11:19 -0000 (Mon, 08 May 2023)
git_url: https://git.bioconductor.org/packages/gespeR
git_branch: devel
git_last_commit: 93548ba
git_last_commit_date: 2023-04-25 14:37:05 -0000 (Tue, 25 Apr 2023)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    ERROR  skipped

Summary

Package: gespeR
Version: 1.33.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data gespeR
StartedAt: 2023-05-09 02:08:39 -0000 (Tue, 09 May 2023)
EndedAt: 2023-05-09 02:09:40 -0000 (Tue, 09 May 2023)
EllapsedTime: 61.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data gespeR
###
##############################################################################
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* checking for file ‘gespeR/DESCRIPTION’ ... OK
* preparing ‘gespeR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘gespeR.Rnw’ using knitr
Error: processing vignette 'gespeR.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'gespeR.tex' failed.
LaTeX errors:
! Undefined control sequence.
l.94 \Rhref
           {https://doi.org/10.18129/B9.bioc.gespeR}{doi:10.18129\slash{}B9....

? 
! Emergency stop.
l.94 \Rhref
           {https://doi.org/10.18129/B9.bioc.gespeR}{doi:10.18129\slash{}B9....
End of file on the terminal!

!  ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘gespeR.Rnw’

SUMMARY: processing the following file failed:
  ‘gespeR.Rnw’

Error: Vignette re-building failed.
Execution halted