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This page was generated on 2023-05-10 10:04:37 -0000 (Wed, 10 May 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-03-12 r83975) -- "Unsuffered Consequences" 6211
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BUILD results for pareg on kunpeng1


To the developers/maintainers of the pareg package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/pareg.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 1444/2194HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
pareg 1.5.0  (landing page)
Kim Philipp Jablonski
Snapshot Date: 2023-05-08 19:11:19 -0000 (Mon, 08 May 2023)
git_url: https://git.bioconductor.org/packages/pareg
git_branch: devel
git_last_commit: 7b735ad
git_last_commit_date: 2023-04-25 15:37:24 -0000 (Tue, 25 Apr 2023)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    ERROR  skipped

Summary

Package: pareg
Version: 1.5.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data pareg
StartedAt: 2023-05-09 04:37:14 -0000 (Tue, 09 May 2023)
EndedAt: 2023-05-09 04:38:51 -0000 (Tue, 09 May 2023)
EllapsedTime: 97.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data pareg
###
##############################################################################
##############################################################################


* checking for file ‘pareg/DESCRIPTION’ ... OK
* preparing ‘pareg’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘pareg.Rmd’ using rmarkdown
Quitting from lines 145-150 (pareg.Rmd) 
Error: processing vignette 'pareg.Rmd' failed with diagnostics:
Valid installation of TensorFlow not found.

Python environments searched for 'tensorflow' package:
 /usr/bin/python3.10

Python exception encountered:
 Traceback (most recent call last):
  File "/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/library/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook
    return _run_hook(name, _hook)
  File "/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/library/reticulate/python/rpytools/loader.py", line 93, in _run_hook
    module = hook()
  File "/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/library/reticulate/python/rpytools/loader.py", line 117, in _hook
    return _find_and_load(name, import_)
  File "/usr/local/lib/python3.10/dist-packages/tensorflow/__init__.py", line 37, in <module>
    from tensorflow.python.tools import module_util as _module_util
  File "/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/library/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook
    return _run_hook(name, _hook)
  File "/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/library/reticulate/python/rpytools/loader.py", line 93, in _run_hook
    module = hook()
  File "/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/library/reticulate/python/rpytools/loader.py", line 117, in _hook
    return _find_and_load(name, import_)
  File "/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/library/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook
    return _run_hook(name, _hook)
  File "/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/library/reticulate/python/rpytools/loader.py", line 93, in _run_hook
    module = hook()
  File "/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/library/reticulate/python/rpytools/loader.py", line 117, in _hook
    return _find_and_load(name, import_)
  File "/usr/local/lib/python3.10/dist-packages/tensorflow/python/__init__.py", line 45, in <module>
    from tensorflow.python.feature_column import feature_column_lib as feature_column
  File "/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/library/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook
    return _run_hook(name, _hook)
  File "/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/library/reticulate/python/rpytools/loader.py", line 93, in _run_hook
    module = hook()
  File "/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/library/reticulate/python/rpytools/loader.py", line 117, in _hook
    return _find_and_load(name, import_)
  File "/usr/local/lib/python3.10/dist-packages/tensorflow/python/feature_column/feature_column_lib.py", line 18, in <module>
    from tensorflow.python.feature_column.feature_column import *
  File "/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/library/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook
    return _run_hook(name, _hook)
  File "/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/library/reticulate/python/rpytools/loader.py", line 93, in _run_hook
    module = hook()
  File "/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/library/reticulate/python/rpytools/loader.py", line 117, in _hook
    return _find_and_load(name, import_)
  File "/usr/local/lib/python3.10/dist-packages/tensorflow/python/feature_column/feature_column.py", line 143, in <module>
    from tensorflow.python.layers import base
  File "/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/library/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook
    return _run_hook(name, _hook)
  File "/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/library/reticulate/python/rpytools/loader.py", line 93, in _run_hook
    module = hook()
  File "/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/library/reticulate/python/rpytools/loader.py", line 117, in _hook
    return _find_and_load(name, import_)
  File "/usr/local/lib/python3.10/dist-packages/tensorflow/python/layers/base.py", line 16, in <module>
    from tensorflow.python.keras.legacy_tf_layers import base
  File "/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/library/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook
    return _run_hook(name, _hook)
  File "/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/library/reticulate/python/rpytools/loader.py", line 93, in _run_hook
    module = hook()
  File "/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/library/reticulate/python/rpytools/loader.py", line 117, in _hook
    return _find_and_load(name, import_)
  File "/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/library/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook
    return _run_hook(name, _hook)
  File "/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/library/reticulate/python/rpytools/loader.py", line 93, in _run_hook
    module = hook()
  File "/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/library/reticulate/python/rpytools/loader.py", line 117, in _hook
    return _find_and_load(name, import_)
  File "/usr/local/lib/python3.10/dist-packages/tensorflow/python/keras/__init__.py", line 25, in <module>
    from tensorflow.python.keras import models
  File "/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/library/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook
    return _run_hook(name, _hook)
  File "/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/library/reticulate/python/rpytools/loader.py", line 93, in _run_hook
    module = hook()
  File "/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/library/reticulate/python/rpytools/loader.py", line 117, in _hook
    return _find_and_load(name, import_)
  File "/usr/local/lib/python3.10/dist-packages/tensorflow/python/keras/models.py", line 22, in <module>
    from tensorflow.python.keras.engine import functional
  File "/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/library/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook
    return _run_hook(name, _hook)
  File "/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/library/reticulate/python/rpytools/loader.py", line 93, in _run_hook
    module = hook()
  File "/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/library/reticulate/python/rpytools/loader.py", line 117, in _hook
    return _find_and_load(name, import_)
  File "/usr/local/lib/python3.10/dist-packages/tensorflow/python/keras/engine/functional.py", line 32, in <module>
    from tensorflow.python.keras.engine import training as training_lib
  File "/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/library/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook
    return _run_hook(name, _hook)
  File "/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/library/reticulate/python/rpytools/loader.py", line 93, in _run_hook
    module = hook()
  File "/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/library/reticulate/python/rpytools/loader.py", line 117, in _hook
    return _find_and_load(name, import_)
  File "/usr/local/lib/python3.10/dist-packages/tensorflow/python/keras/engine/training.py", line 54, in <module>
    from tensorflow.python.keras.saving import hdf5_format
  File "/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/library/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook
    return _run_hook(name, _hook)
  File "/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/library/reticulate/python/rpytools/loader.py", line 93, in _run_hook
    module = hook()
  File "/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/library/reticulate/python/rpytools/loader.py", line 117, in _hook
    return _find_and_load(name, import_)
  File "/usr/local/lib/python3.10/dist-packages/tensorflow/pytho
--- failed re-building ‘pareg.Rmd’

--- re-building ‘pathway_similarities.Rmd’ using rmarkdown
--- finished re-building ‘pathway_similarities.Rmd’

SUMMARY: processing the following file failed:
  ‘pareg.Rmd’

Error: Vignette re-building failed.
Execution halted