Back to Build/check report for BioC 3.18: simplified long |
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This page was generated on 2023-05-10 10:04:37 -0000 (Wed, 10 May 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-03-12 r83975) -- "Unsuffered Consequences" | 6211 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the projectR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/projectR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
Package 1536/2194 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
projectR 1.17.5 (landing page) Genevieve Stein-O'Brien
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | ERROR | skipped | |||||||||
Package: projectR |
Version: 1.17.5 |
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data projectR |
StartedAt: 2023-05-09 04:54:56 -0000 (Tue, 09 May 2023) |
EndedAt: 2023-05-09 04:56:02 -0000 (Tue, 09 May 2023) |
EllapsedTime: 66.1 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data projectR ### ############################################################################## ############################################################################## * checking for file ‘projectR/DESCRIPTION’ ... OK * preparing ‘projectR’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘projectR.Rmd’ using rmarkdown trying URL 'https://cloud.r-project.org/src/contrib/waldo_0.5.1.tar.gz' Content type 'application/x-gzip' length 39619 bytes (38 KB) ================================================== downloaded 38 KB * installing *source* package ‘waldo’ ... ** package ‘waldo’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (waldo) The downloaded source packages are in '/tmp/RtmpjQajMx/downloaded_packages' fmtutil [ERROR]: format directory not writable: /var/lib/texmf/web2c Error: processing vignette 'projectR.Rmd' failed with diagnostics: Located more than one ‘weave’ output file (by engine ‘knitr::rmarkdown’) for vignette with name ‘projectR’: ‘projectR.html’ (1.1865e+06 bytes), ‘projectR.pdf’ (328032 bytes), ‘projectR.tex’ (56749 bytes) --- failed re-building ‘projectR.Rmd’ SUMMARY: processing the following file failed: ‘projectR.Rmd’ Error: Vignette re-building failed. Execution halted