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This page was generated on 2023-05-10 10:04:43 -0000 (Wed, 10 May 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-03-12 r83975) -- "Unsuffered Consequences" 6211
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CHECK results for vsclust on kunpeng1


To the developers/maintainers of the vsclust package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/vsclust.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 2163/2194HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
vsclust 1.3.0  (landing page)
Veit Schwaemmle
Snapshot Date: 2023-05-08 19:11:19 -0000 (Mon, 08 May 2023)
git_url: https://git.bioconductor.org/packages/vsclust
git_branch: devel
git_last_commit: 760e736
git_last_commit_date: 2023-04-25 15:40:46 -0000 (Tue, 25 Apr 2023)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  ERROR    OK    ERROR  

Summary

Package: vsclust
Version: 1.3.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:vsclust.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings vsclust_1.3.0.tar.gz
StartedAt: 2023-05-10 08:05:37 -0000 (Wed, 10 May 2023)
EndedAt: 2023-05-10 08:05:39 -0000 (Wed, 10 May 2023)
EllapsedTime: 2.0 seconds
RetCode: 1
Status:   ERROR  
CheckDir: vsclust.Rcheck
Warnings: NA

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:vsclust.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings vsclust_1.3.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/vsclust.Rcheck’
* using R Under development (unstable) (2023-03-12 r83975)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.2 LTS
* using session charset: UTF-8
* checking for file ‘vsclust/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘vsclust’ version ‘1.3.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘vsclust’ can be installed ... ERROR
Installation failed.
See ‘/home/biocbuild/bbs-3.17-bioc/meat/vsclust.Rcheck/00install.out’ for details.
* DONE

Status: 1 ERROR
See
  ‘/home/biocbuild/bbs-3.17-bioc/meat/vsclust.Rcheck/00check.log’
for details.

Installation output

vsclust.Rcheck/00install.out

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##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL vsclust
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library’
* installing *source* package ‘vsclust’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
g++ -std=gnu++17 -shared -L/usr/local/lib -o vsclust.so RcppExports.o vsclust_algo.o
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: Relocations in generic ELF (EM: 62)
/usr/bin/ld: RcppExports.o: error adding symbols: file in wrong format
collect2: error: ld returned 1 exit status
make: *** [/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/lib/R/share/make/shlib.mk:10: vsclust.so] Error 1
ERROR: compilation failed for package ‘vsclust’
* removing ‘/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/vsclust’
* restoring previous ‘/home/biocbuild/bbs-3.17-bioc/R-devel_2023-03-12_r83975-bin/site-library/vsclust’

Tests output

Example timings