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This page was generated on 2023-05-31 05:44:30 -0000 (Wed, 31 May 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch644.3.0 (2023-04-21) -- "Already Tomorrow" 4219
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for Biostrings on kunpeng1


To the developers/maintainers of the Biostrings package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Biostrings.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 212/2197HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Biostrings 2.69.1  (landing page)
Hervé Pagès
Snapshot Date: 2023-05-29 10:19:22 -0000 (Mon, 29 May 2023)
git_url: https://git.bioconductor.org/packages/Biostrings
git_branch: devel
git_last_commit: 03aa8df
git_last_commit_date: 2023-05-16 05:13:39 -0000 (Tue, 16 May 2023)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    ERROR  skipped

Summary

Package: Biostrings
Version: 2.69.1
Command: /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data Biostrings
StartedAt: 2023-05-29 15:20:00 -0000 (Mon, 29 May 2023)
EndedAt: 2023-05-29 15:22:01 -0000 (Mon, 29 May 2023)
EllapsedTime: 120.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data Biostrings
###
##############################################################################
##############################################################################


* checking for file ‘Biostrings/DESCRIPTION’ ... OK
* preparing ‘Biostrings’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘matchprobes.Rmd’ using rmarkdown

Quitting from lines 200-205 [bap] (matchprobes.Rmd)
Error: processing vignette 'matchprobes.Rmd' failed with diagnostics:
there is no package called 'affydata'
--- failed re-building ‘matchprobes.Rmd’

--- re-building ‘Biostrings2Classes.Rnw’ using Sweave
--- finished re-building ‘Biostrings2Classes.Rnw’

--- re-building ‘BiostringsQuickOverview.Rnw’ using Sweave
--- finished re-building ‘BiostringsQuickOverview.Rnw’

--- re-building ‘MultipleAlignments.Rnw’ using Sweave
--- finished re-building ‘MultipleAlignments.Rnw’

--- re-building ‘PairwiseAlignments.Rnw’ using Sweave
--- finished re-building ‘PairwiseAlignments.Rnw’

SUMMARY: processing the following file failed:
  ‘matchprobes.Rmd’

Error: Vignette re-building failed.
Execution halted