Back to Build/check report for BioC 3.18:   simplified   long
AB[C]DEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2023-05-31 05:44:32 -0000 (Wed, 31 May 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch644.3.0 (2023-04-21) -- "Already Tomorrow" 4219
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for CNVRanger on kunpeng1


To the developers/maintainers of the CNVRanger package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CNVRanger.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 383/2197HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CNVRanger 1.17.3  (landing page)
Ludwig Geistlinger
Snapshot Date: 2023-05-29 10:19:22 -0000 (Mon, 29 May 2023)
git_url: https://git.bioconductor.org/packages/CNVRanger
git_branch: devel
git_last_commit: f85d494
git_last_commit_date: 2023-05-22 18:20:17 -0000 (Mon, 22 May 2023)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    ERROR  skipped

Summary

Package: CNVRanger
Version: 1.17.3
Command: /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data CNVRanger
StartedAt: 2023-05-29 16:15:09 -0000 (Mon, 29 May 2023)
EndedAt: 2023-05-29 16:17:11 -0000 (Mon, 29 May 2023)
EllapsedTime: 122.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R-4.3.0/bin/R CMD build --keep-empty-dirs --no-resave-data CNVRanger
###
##############################################################################
##############################################################################


* checking for file ‘CNVRanger/DESCRIPTION’ ... OK
* preparing ‘CNVRanger’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CNVRanger.Rmd’ using rmarkdown

Quitting from lines 420-424 [getBtGenes2] (CNVRanger.Rmd)
Error: processing vignette 'CNVRanger.Rmd' failed with diagnostics:
failed to load resource
  name: AH60948
  title: Ensembl 92 EnsDb for Bos Taurus
  reason: database disk image is malformed
--- failed re-building ‘CNVRanger.Rmd’

SUMMARY: processing the following file failed:
  ‘CNVRanger.Rmd’

Error: Vignette re-building failed.
Execution halted